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    uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841144, updated on 18-Sep-2024

    Summary

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    Official Full Name
    uncharacterized protein
    Primary source
    TAIR:AT1G47400
    Locus tag
    AT1G47400
    See related
    Araport:AT1G47400
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T3F24.21; T3F24_21
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (17385707..17386485)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. IRONMAN tunes responses to iron deficiency in concert with environmental pH. Gautam CK, et al. Plant Physiol, 2021 Nov 3. PMID 34618058, Free PMC Article
    2. The Putative Peptide Gene FEP1 Regulates Iron Deficiency Response in Arabidopsis. Hirayama T, et al. Plant Cell Physiol, 2018 Sep 1. PMID 30032190
    3. IRON MAN is a ubiquitous family of peptides that control iron transport in plants. Grillet L, et al. Nat Plants, 2018 Nov. PMID 30323182
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. IRONMAN tunes responses to iron deficiency in concert with environmental pH.
      Title: IRONMAN tunes responses to iron deficiency in concert with environmental pH.
    2. IMA constitutes a novel family of peptides that are critical for the acquisition and cellular homeostasis of Fe across land plants. [AtIMA1]
      Title: IRON MAN is a ubiquitous family of peptides that control iron transport in plants.
    Submit: New GeneRIF Correction

    General gene information

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    NM_103634.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables transition metal ion binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in coumarin metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of iron ion transport IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in response to alkaline pH IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to iron ion starvation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_175173.2
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47395.1); Has 11 Blast hits to 11 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      17385707..17386485
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103634.3 → NP_175173.2  uncharacterized protein AT1G47400 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175173.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W0F5, A0A5S9WMV7, Q3ECW0
    Nucleotide Protein
    Heading Accession and Version

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