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    IQD28 IQ-domain 28 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838000, updated on 18-Sep-2024

    Summary

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    Official Symbol
    IQD28
    Official Full Name
    IQ-domain 28
    Primary source
    TAIR:AT1G14380
    Locus tag
    AT1G14380
    See related
    Araport:AT1G14380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14L17.15; F14L17_15; IQ-domain 28
    Summary
    Encodes a microtubule-associated protein.
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    Genomic context

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    See IQD28 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (4918010..4921682, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Duplicated homeodomain-like superfamily protein Neighboring gene UDP-galactose transporter 3 Neighboring gene ncRNA Neighboring gene protein kinase 2A Neighboring gene ncRNA Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene ubiquitin carrier protein 1 Neighboring gene ssDNA-binding transcriptional regulator

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Purification and characterization of novel microtubule-associated proteins from Arabidopsis cell suspension cultures. Hamada T, et al. Plant Physiol, 2013 Dec. PMID 24134884, Free PMC Article
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001035969.2
    NM_001332114.1
    NM_001332115.1
    NM_001332116.1
    NM_001332117.1
    NM_101305.4
    NM_202095.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in extracellular region HDA PubMed 
    part_of microtubule associated complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    IQ-domain 28
    NP_001031046.1
    • IQ-domain 28 (IQD28); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 29 (TAIR:AT2G02790.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001319001.1
    • IQ-domain 28 (IQD28); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 29 (TAIR:AT2G02790.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_563950.1
    • IQ-domain 28 (IQD28); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 29 (TAIR:AT2G02790.1); Has 6802 Blast hits to 5296 proteins in 468 species: Archae - 2; Bacteria - 474; Metazoa - 2682; Fungi - 509; Plants - 1003; Viruses - 37; Other Eukaryotes - 2095 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4918010..4921682 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101305.4 → NP_563950.1  IQ-domain 28 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563950.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GZ87, Q8LAE0, Q9M9S5
      UniProtKB/TrEMBL
      A0A178W698
      Conserved Domains (3) summary
      PTZ00121
      Location:256 → 569
      PTZ00121; MAEBL; Provisional
      smart00015
      Location:92 → 114
      IQ; Calmodulin-binding motif
      pfam13178
      Location:574 → 621
      DUF4005; Protein of unknown function (DUF4005)

    2. NM_001332114.1 → NP_001319001.1  IQ-domain 28 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2DVR5, F4HUK0

    3. NM_001035969.2 → NP_001031046.1  IQ-domain 28 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031046.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GZ87, Q8LAE0, Q9M9S5
      UniProtKB/TrEMBL
      A0A178W698
      Conserved Domains (3) summary
      PTZ00121
      Location:256 → 569
      PTZ00121; MAEBL; Provisional
      smart00015
      Location:92 → 114
      IQ; Calmodulin-binding motif
      pfam13178
      Location:574 → 621
      DUF4005; Protein of unknown function (DUF4005)

    4. NM_001332117.1 → NP_001323289.1  IQ-domain 28 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AWK4, A0A7G2DVR5

    5. NM_202095.3 → NP_973824.1  IQ-domain 28 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973824.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2DVR5, F4HUK0
      Conserved Domains (2) summary
      smart00015
      Location:92 → 114
      IQ; Calmodulin-binding motif
      pfam13178
      Location:506 → 576
      DUF4005; Protein of unknown function (DUF4005)

    6. NM_001332116.1 → NP_001323291.1  IQ-domain 28 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2DVR5, F4HUK0

    7. NM_001332115.1 → NP_001323290.1  IQ-domain 28 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GZ87, Q8LAE0, Q9M9S5
      UniProtKB/TrEMBL
      A0A178W698
      Conserved Domains (3) summary
      PTZ00121
      Location:256 → 569
      PTZ00121; MAEBL; Provisional
      smart00015
      Location:92 → 114
      IQ; Calmodulin-binding motif
      pfam13178
      Location:574 → 621
      DUF4005; Protein of unknown function (DUF4005)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GZ87.1

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