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    TAFII59 TATA BOX ASSOCIATED FACTOR II 59 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839370, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TAFII59
    Official Full Name
    TATA BOX ASSOCIATED FACTOR II 59
    Primary source
    TAIR:AT1G04950
    Locus tag
    AT1G04950
    See related
    Araport:AT1G04950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATTAF6; EMB2781; EMBRYO DEFECTIVE 2781; F13M7.6; F13M7_6; TAF6; TATA BOX ASSOCIATED FACTOR II 59; TBP-associated factor 6
    Summary
    Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant.
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    Genomic context

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    See TAFII59 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Sequence:
    Chromosome: 1; NC_003070.9 (1403085..1407531, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene HIT-type Zinc finger family protein Neighboring gene translocon at the inner envelope membrane of chloroplasts 20 Neighboring gene golgin family A protein (DUF1664) Neighboring gene lipid-binding serum glycoprotein family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis TFIID factor AtTAF6 controls pollen tube growth. Lago C, et al. Dev Biol, 2005 Sep 1. PMID 16039640
    2. Three functionally redundant plant-specific paralogs are core subunits of the SAGA histone acetyltransferase complex in Arabidopsis. Wu CJ, et al. Mol Plant, 2021 Jul 5. PMID 33737195
    3. Yeast two-hybrid map of Arabidopsis TFIID. Lawit SJ, et al. Plant Mol Biol, 2007 May. PMID 17340043
    4. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    5. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001035892.3
    NM_100373.4
    NM_179261.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA polymerase II general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within pollen tube growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of SAGA complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of SLIK (SAGA-like) complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of transcription factor TFIID complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    TATA BOX ASSOCIATED FACTOR II 59
    NP_001030969.1
    • TATA BOX ASSOCIATED FACTOR II 59 (TAFII59); FUNCTIONS IN: RNA polymerase II transcription factor activity, DNA binding, transcription initiation factor activity; INVOLVED IN: pollen tube growth, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442), Histone-fold (InterPro:IPR009072), TATA box binding protein associated factor (TAF) (InterPro:IPR004823); BEST Arabidopsis thaliana protein match is: TBP-ASSOCIATED FACTOR 6B (TAIR:AT1G54360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_171987.1
    • TATA BOX ASSOCIATED FACTOR II 59 (TAFII59); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity, DNA binding; INVOLVED IN: pollen tube growth, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442), Histone-fold (InterPro:IPR009072), TATA box binding protein associated factor (TAF) (InterPro:IPR004823); BEST Arabidopsis thaliana protein match is: TBP-ASSOCIATED FACTOR 6B (TAIR:AT1G54360.1); Has 496 Blast hits to 490 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 209; Fungi - 144; Plants - 74; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).
    NP_849592.1
    • TATA BOX ASSOCIATED FACTOR II 59 (TAFII59); FUNCTIONS IN: RNA polymerase II transcription factor activity, DNA binding, transcription initiation factor activity; INVOLVED IN: pollen tube growth, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442), Histone-fold (InterPro:IPR009072), TATA box binding protein associated factor (TAF) (InterPro:IPR004823); BEST Arabidopsis thaliana protein match is: TBP-ASSOCIATED FACTOR 6B (TAIR:AT1G54360.1); Has 496 Blast hits to 490 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 209; Fungi - 144; Plants - 74; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1403085..1407531 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179261.4 → NP_849592.1  TATA BOX ASSOCIATED FACTOR II 59 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849592.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DGR1, B9DH88, Q9MAU3
      UniProtKB/TrEMBL
      A0A178W741, A0A654E7W6
      Conserved Domains (1) summary
      COG5095
      Location:1 → 383
      TAF6; Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

    2. NM_100373.4 → NP_171987.1  TATA BOX ASSOCIATED FACTOR II 59 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171987.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DGR1, B9DH88, Q9MAU3
      UniProtKB/TrEMBL
      A0A178W741, A0A654E7W6
      Conserved Domains (1) summary
      COG5095
      Location:1 → 383
      TAF6; Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

    3. NM_001035892.3 → NP_001030969.1  TATA BOX ASSOCIATED FACTOR II 59 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030969.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DGR1, B9DH88, Q9MAU3
      UniProtKB/TrEMBL
      A0A178W741, A0A654E7W6
      Conserved Domains (1) summary
      COG5095
      Location:1 → 383
      TAF6; Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9MAU3.1

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