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    SPFH/Band 7/PHB domain-containing membrane-associated protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843320, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SPFH/Band 7/PHB domain-containing membrane-associated protein family
    Primary source
    TAIR:AT1G69840
    Locus tag
    AT1G69840
    See related
    Araport:AT1G69840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T17F3.13; T17F3_13
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (26293588..26295922, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Defensin-like (DEFL) family protein Neighboring gene alpha-amylase-like 3 Neighboring gene nitrate transporter 1:2 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cell wall contributes to the stability of plasma membrane nanodomain organization of Arabidopsis thaliana FLOTILLIN2 and HYPERSENSITIVE INDUCED REACTION1 proteins. Daněk M, et al. Plant J, 2020 Feb. PMID 31610051
    2. Purification of low-abundance Arabidopsis plasma-membrane protein complexes and identification of candidate components. Qi Y, et al. Plant J, 2009 Mar. PMID 19000159
    3. Telomerase Interaction Partners-Insight from Plants. Fulnečková J, et al. Int J Mol Sci, 2021 Dec 29. PMID 35008793, Free PMC Article
    4. Tandem affinity purification of AtTERT reveals putative interaction partners of plant telomerase in vivo. Majerská J, et al. Protoplasma, 2017 Jul. PMID 27853871
    5. Identification of new intrinsic proteins in Arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2004 Jul. PMID 15060130

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001084333.2
    NM_001084334.2
    NM_001198429.1
    NM_179539.4
    NM_202387.4
    NM_202388.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein histidine kinase binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion HDA PubMed 
    located_in plant-type vacuole HDA PubMed 
    located_in plant-type vacuole membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    SPFH/Band 7/PHB domain-containing membrane-associated protein family
    NP_001077802.1
    • SPFH/Band 7/PHB domain-containing membrane-associated protein family; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT5G62740.1); Has 5669 Blast hits to 5668 proteins in 1821 species: Archae - 158; Bacteria - 3805; Metazoa - 307; Fungi - 277; Plants - 271; Viruses - 5; Other Eukaryotes - 846 (source: NCBI BLink).
    NP_001077803.1
    • SPFH/Band 7/PHB domain-containing membrane-associated protein family; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT5G62740.1); Has 5669 Blast hits to 5668 proteins in 1821 species: Archae - 158; Bacteria - 3805; Metazoa - 307; Fungi - 277; Plants - 271; Viruses - 5; Other Eukaryotes - 846 (source: NCBI BLink).
    NP_001185358.1
    • SPFH/Band 7/PHB domain-containing membrane-associated protein family; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT5G62740.1).
    NP_177142.1
    • SPFH/Band 7/PHB domain-containing membrane-associated protein family; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, chloroplast, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT5G62740.1); Has 5669 Blast hits to 5668 proteins in 1821 species: Archae - 158; Bacteria - 3805; Metazoa - 307; Fungi - 277; Plants - 271; Viruses - 5; Other Eukaryotes - 846 (source: NCBI BLink).
    NP_849870.1
    • SPFH/Band 7/PHB domain-containing membrane-associated protein family; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, chloroplast, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT5G62740.1); Has 5669 Blast hits to 5668 proteins in 1821 species: Archae - 158; Bacteria - 3805; Metazoa - 307; Fungi - 277; Plants - 271; Viruses - 5; Other Eukaryotes - 846 (source: NCBI BLink).
    NP_974116.1
    • SPFH/Band 7/PHB domain-containing membrane-associated protein family; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT5G62740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_974117.1
    • SPFH/Band 7/PHB domain-containing membrane-associated protein family; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT5G62740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26293588..26295922 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105652.6 → NP_177142.1  SPFH/Band 7/PHB domain-containing membrane-associated protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177142.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DGQ2, Q9CAR7
      UniProtKB/TrEMBL
      A0A178WD18, A0A5S9WT01
      Conserved Domains (1) summary
      cd03407
      Location:10 → 278
      SPFH_like_u4; Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily

    2. NM_179539.4 → NP_849870.1  SPFH/Band 7/PHB domain-containing membrane-associated protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849870.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DGQ2, Q9CAR7
      UniProtKB/TrEMBL
      A0A178WD18, A0A5S9WT01
      Conserved Domains (1) summary
      cd03407
      Location:10 → 278
      SPFH_like_u4; Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily

    3. NM_202387.4 → NP_974116.1  SPFH/Band 7/PHB domain-containing membrane-associated protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974116.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DGQ2, Q9CAR7
      UniProtKB/TrEMBL
      A0A178WD18, A0A5S9WT01
      Conserved Domains (1) summary
      cd03407
      Location:10 → 278
      SPFH_like_u4; Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily

    4. NM_202388.4 → NP_974117.1  SPFH/Band 7/PHB domain-containing membrane-associated protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974117.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DGQ2, Q9CAR7
      UniProtKB/TrEMBL
      A0A178WD18, A0A5S9WT01
      Conserved Domains (1) summary
      cd03407
      Location:10 → 278
      SPFH_like_u4; Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily

    5. NM_001198429.1 → NP_001185358.1  SPFH/Band 7/PHB domain-containing membrane-associated protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185358.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DGQ2, Q9CAR7
      UniProtKB/TrEMBL
      A0A178WD18, A0A5S9WT01
      Conserved Domains (1) summary
      cd03407
      Location:10 → 278
      SPFH_like_u4; Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily

    6. NM_001084333.2 → NP_001077802.1  SPFH/Band 7/PHB domain-containing membrane-associated protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077802.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DGQ2, Q9CAR7
      UniProtKB/TrEMBL
      A0A178WD18, A0A5S9WT01
      Conserved Domains (1) summary
      cd03407
      Location:10 → 278
      SPFH_like_u4; Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily

    7. NM_001084334.2 → NP_001077803.1  SPFH/Band 7/PHB domain-containing membrane-associated protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077803.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DGQ2, Q9CAR7
      UniProtKB/TrEMBL
      A0A178WD18, A0A5S9WT01
      Conserved Domains (1) summary
      cd03407
      Location:10 → 278
      SPFH_like_u4; Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9CAR7.1

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