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    PTAC13 plastid transcriptionally active 13 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820077, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PTAC13
    Official Full Name
    plastid transcriptionally active 13
    Primary source
    TAIR:AT3G09210
    Locus tag
    AT3G09210
    See related
    Araport:AT3G09210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    plastid transcriptionally active 13
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    Genomic context

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    See PTAC13 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (2825142..2826922, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene mediator of RNA polymerase II transcription subunit Neighboring gene Concanavalin A-like lectin family protein Neighboring gene Ribosomal protein L10 family protein Neighboring gene laccase 7 Neighboring gene myb domain protein 1 Neighboring gene kinase with tetratricopeptide repeat domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. pTAC2, -6, and -12 are components of the transcriptionally active plastid chromosome that are required for plastid gene expression. Pfalz J, et al. Plant Cell, 2006 Jan. PMID 16326926, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_111755.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in transcription elongation-coupled chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast nucleoid HDA PubMed 

    General protein information

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    Preferred Names
    plastid transcriptionally active 13
    NP_566346.1
    • plastid transcriptionally active 13 (PTAC13); FUNCTIONS IN: transcription elongation regulator activity; INVOLVED IN: positive regulation of RNA elongation from RNA polymerase II promoter; LOCATED IN: plastid chromosome, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Transcription antitermination protein, NusG, N-terminal (InterPro:IPR006645), Translation protein SH3-like, subgroup (InterPro:IPR014722), KOW (InterPro:IPR005824); Has 3797 Blast hits to 3795 proteins in 1334 species: Archae - 0; Bacteria - 2562; Metazoa - 0; Fungi - 2; Plants - 31; Viruses - 0; Other Eukaryotes - 1202 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2825142..2826922 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111755.3 → NP_566346.1  plastid transcriptionally active 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566346.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VAZ4, A0A654F6U1, Q8LAK7, Q94AA3, Q9SR41
      Conserved Domains (2) summary
      PRK05609
      Location:140 → 327
      nusG; transcription antitermination protein NusG; Validated
      cd09890
      Location:97 → 208
      NGN_plant; Plant N-Utilization Substance G (NusG) N-terminal (NGN) domain
    Nucleotide Protein
    Heading Accession and Version

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