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    TBL20 TRICHOME BIREFRINGENCE-LIKE 20 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821154, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TBL20
    Official Full Name
    TRICHOME BIREFRINGENCE-LIKE 20
    Primary source
    TAIR:AT3G02440
    Locus tag
    AT3G02440
    See related
    Araport:AT3G02440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F16B3.7; F16B3_7; TRICHOME BIREFRINGENCE-LIKE 20
    Summary
    Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
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    Genomic context

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    See TBL20 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (500374..502257, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene dihydroflavonol 4-reductase/flavanone protein Neighboring gene transmembrane protein, putative (DUF679) Neighboring gene cell division protein ftsH Neighboring gene Ypt/Rab-GAP domain of gyp1p superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables O-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TRICHOME BIREFRINGENCE-LIKE 20
    NP_001319451.1
    • TRICHOME BIREFRINGENCE-LIKE 20 (TBL20); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 19 (TAIR:AT5G15900.1); Has 1391 Blast hits to 1344 proteins in 50 species: Archae - 0; Bacteria - 4; Metazoa - 66; Fungi - 9; Plants - 1282; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      500374..502257 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337408.1 → NP_001325666.1  TRICHOME BIREFRINGENCE-LIKE 20 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VP17, A0A1I9LLY1

    2. NM_001337407.1 → NP_001319451.1  TRICHOME BIREFRINGENCE-LIKE 20 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M896
      UniProtKB/TrEMBL
      A0A178VP17, A0A654F3F7
      Conserved Domains (2) summary
      pfam13839
      Location:179 → 467
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:127 → 178
      PMR5N; PMR5 N terminal Domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M896.2

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