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    DUF1639 family protein, putative (DUF1639) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821358, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DUF1639 family protein, putative (DUF1639)
    Primary source
    TAIR:AT3G18295
    Locus tag
    AT3G18295
    See related
    Araport:AT3G18295
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (6281204..6282306)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene zinc finger protein-like protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene TATA box-binding protein associated factor RNA polymerase I subunit C Neighboring gene F-box and associated interaction domains-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    2. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_112714.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DUF1639 family protein, putative (DUF1639)
    NP_188458.1
    • Protein of unknown function (DUF1639); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1639) (TAIR:AT1G48770.1); Has 259 Blast hits to 258 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 259; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6281204..6282306
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112714.3 → NP_188458.1  DUF1639 family protein, putative (DUF1639) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188458.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VG27, A0A5S9XDF9, A0A654F9N8, Q9LS61
      Conserved Domains (1) summary
      pfam07797
      Location:158 → 208
      DUF1639; Protein of unknown function (DUF1639)
    Nucleotide Protein
    Heading Accession and Version

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