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    Chaperone DnaJ-domain superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820531, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Chaperone DnaJ-domain superfamily protein
    Primary source
    TAIR:AT3G13310
    Locus tag
    AT3G13310
    See related
    Araport:AT3G13310
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DJC66; DNA J protein C66
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (4310544..4311629, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene varicose-like protein Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene cation exchanger 2 Neighboring gene proteasome activating protein 200

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of chloroplast J proteins. Chiu CC, et al. PLoS One, 2013. PMID 23894646, Free PMC Article
    2. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_112176.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Chaperone DnaJ-domain superfamily protein
    NP_187939.1
    • Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT2G17880.1); Has 19059 Blast hits to 19056 proteins in 3143 species: Archae - 142; Bacteria - 8678; Metazoa - 3049; Fungi - 1540; Plants - 1805; Viruses - 5; Other Eukaryotes - 3840 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4310544..4311629 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112176.2 → NP_187939.1  Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187939.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VEF7, A0A5S9XBX0, Q9LTT7
      Conserved Domains (1) summary
      pfam00226
      Location:64 → 123
      DnaJ; DnaJ domain
    Nucleotide Protein
    Heading Accession and Version

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