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    F-box SKIP23-like protein (DUF295) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822166, updated on 18-Sep-2024

    Summary

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    Official Full Name
    F-box SKIP23-like protein (DUF295)
    Primary source
    TAIR:AT3G25750
    Locus tag
    AT3G25750
    See related
    Araport:AT3G25750
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (9400955..9402088)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ethylene response DNA binding factor 3 Neighboring gene methionine aminopeptidase 1C Neighboring gene allene oxide cyclase 1 Neighboring gene allene oxide cyclase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    F-box SKIP23-like protein (DUF295)
    NP_189203.1
    • CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT2G26160.1); Has 337 Blast hits to 336 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 337; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      9400955..9402088
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338765.1 → NP_001325458.1  F-box SKIP23-like protein (DUF295) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JA53, Q9LS04
      UniProtKB/TrEMBL
      A0A5S9XFS5, A0A654FBM3

    2. NM_113474.1 → NP_189203.1  F-box SKIP23-like protein (DUF295) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189203.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XFS5, A0A654FBM3
      Conserved Domains (3) summary
      PLN03215
      Location:5 → 346
      PLN03215; ascorbic acid mannose pathway regulator 1; Provisional
      pfam00646
      Location:6 → 50
      F-box; F-box domain
      pfam03478
      Location:270 → 321
      DUF295; Protein of unknown function (DUF295)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LS04.2

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