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    Tesmin/TSO1-like CXC domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820861, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Tesmin/TSO1-like CXC domain-containing protein
    Primary source
    TAIR:AT3G16160
    Locus tag
    AT3G16160
    See related
    Araport:AT3G16160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (5473366..5475347, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RHO guanyl-nucleotide exchange factor 13 Neighboring gene photosystem I subunit H-1 Neighboring gene N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein Neighboring gene AMP-dependent synthetase and ligase family protein Neighboring gene Thioesterase superfamily protein Neighboring gene Major facilitator superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis TCX8 functions as a senescence modulator by regulating LOX2 expression. Noh M, et al. Plant Cell Rep, 2021 Apr. PMID 33492497
    2. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Arabidopsis TCX8 functions as a senescence modulator by regulating LOX2 expression.
      Title: Arabidopsis TCX8 functions as a senescence modulator by regulating LOX2 expression.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_112486.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables cis-regulatory region sequence-specific DNA binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tesmin/TSO1-like CXC domain-containing protein
    NP_188237.2
    • Tesmin/TSO1-like CXC domain-containing protein; CONTAINS InterPro DOMAIN/s: Tesmin/TSO1-like, CXC (InterPro:IPR005172); BEST Arabidopsis thaliana protein match is: Tesmin/TSO1-like CXC domain-containing protein (TAIR:AT5G25790.1); Has 1133 Blast hits to 675 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 323; Fungi - 0; Plants - 372; Viruses - 0; Other Eukaryotes - 438 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5473366..5475347 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112486.3 → NP_188237.2  Tesmin/TSO1-like CXC domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188237.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0MEW6, Q700D0, Q9LW71
      UniProtKB/TrEMBL
      A0A5S9XCT2, A0A654FD13
      Conserved Domains (1) summary
      pfam03638
      Location:147 → 182
      TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q700D0.1

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