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    RNA ligase/cyclic nucleotide phosphodiesterase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822438, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA ligase/cyclic nucleotide phosphodiesterase family protein
    Primary source
    TAIR:AT3G28140
    Locus tag
    AT3G28140
    See related
    Araport:AT3G28140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (10470392..10471523)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene nodulin MtN21 /EamA-like transporter family protein Neighboring gene miscRNA Neighboring gene TRICHOME BIREFRINGENCE-LIKE 22 Neighboring gene miscRNA Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_113732.1
    NM_180312.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    RNA ligase/cyclic nucleotide phosphodiesterase family protein
    NP_566834.1
    • RNA ligase/cyclic nucleotide phosphodiesterase family protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: RNA metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097); BEST Arabidopsis thaliana protein match is: RNA ligase/cyclic nucleotide phosphodiesterase family protein (TAIR:AT5G40190.1); Has 104 Blast hits to 104 proteins in 46 species: Archae - 0; Bacteria - 62; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    NP_850643.1
    • RNA ligase/cyclic nucleotide phosphodiesterase family protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: RNA metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097); BEST Arabidopsis thaliana protein match is: RNA ligase/cyclic nucleotide phosphodiesterase family protein (TAIR:AT5G40190.1); Has 114 Blast hits to 114 proteins in 51 species: Archae - 0; Bacteria - 72; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      10470392..10471523
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180312.3 → NP_850643.1  RNA ligase/cyclic nucleotide phosphodiesterase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850643.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XI11, A0A654FDC0, Q9LRS3

    2. NM_113732.1 → NP_566834.1  RNA ligase/cyclic nucleotide phosphodiesterase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566834.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VIE5, A0A5S9XI11, A0A654FDC0, F4IYZ7
    Nucleotide Protein
    Heading Accession and Version

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