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    DNA binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824382, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DNA binding protein
    Primary source
    TAIR:AT3G52170
    Locus tag
    AT3G52170
    See related
    Araport:AT3G52170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T25B15.1
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (19346752..19349555, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene Phosphoglycerate mutase family protein Neighboring gene 3-ketoacyl-CoA synthase 15 Neighboring gene dual specificity protein phosphatase (DsPTP1) family protein Neighboring gene phosphate transporter traffic facilitator1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Continuous expression in tobacco leaves of a Brassica napus PEND homologue blocks differentiation of plastids and development of palisade cells. Wycliffe P, et al. Plant J, 2005 Oct. PMID 16167891
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001203140.2
    NM_001339561.1
    NM_001339562.1
    NM_115077.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    DNA binding protein
    NP_001190069.1
    • DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G58210.4).
    NP_190785.2
    • DNA binding; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G58210.4); Has 240 Blast hits to 221 proteins in 88 species: Archae - 6; Bacteria - 92; Metazoa - 40; Fungi - 6; Plants - 65; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19346752..19349555 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203140.2 → NP_001190069.1  DNA binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190069.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V5Z3, A0A384KN25, A0A5S9XK21, Q8L641

    2. NM_115077.5 → NP_190785.2  DNA binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190785.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V5Z3, A0A384KN25, A0A5S9XK21, Q8L641

    3. NM_001339562.1 → NP_001325656.1  DNA binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LLX0, A0A654FF28

    4. NM_001339561.1 → NP_001325657.1  DNA binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LLX0, A0A654FF28
    Nucleotide Protein
    Heading Accession and Version

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