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    P-loop containing nucleoside triphosphate hydrolases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820376, updated on 18-Sep-2024

    Summary

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    Official Full Name
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Primary source
    TAIR:AT3G12020
    Locus tag
    AT3G12020
    See related
    Araport:AT3G12020
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    25
    Sequence:
    Chromosome: 3; NC_003074.8 (3825980..3835146)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene S-locus related protein SLR1, putative (S1) Neighboring gene C18orf8 Neighboring gene transmembrane/coiled-coil protein (Protein of unknown function DUF106, transmembrane) Neighboring gene DNA-3-methyladenine glycosylase (MAG) Neighboring gene Aha1 domain-containing protein Neighboring gene trichome birefringence-like protein (DUF828) Neighboring gene RAB geranylgeranyl transferase beta subunit 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Separase Promotes Microtubule Polymerization by Activating CENP-E-Related Kinesin Kin7. Moschou PN, et al. Dev Cell, 2016 May 23. PMID 27219063
    2. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001202937.1
    NM_001337969.1
    NM_001337970.1
    NM_112036.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables microtubule motor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in microtubule-based movement IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    NP_001319527.1
    • P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G06670.1).
    NP_187809.3
    • P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G06670.1); Has 40862 Blast hits to 28121 proteins in 1485 species: Archae - 327; Bacteria - 3144; Metazoa - 20118; Fungi - 3973; Plants - 3090; Viruses - 66; Other Eukaryotes - 10144 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3825980..3835146
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112036.4 → NP_187809.3  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187809.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J8L3, Q8GYK5, Q9C7B9, Q9LHL9
      UniProtKB/TrEMBL
      A0A178VNW3, A0A5S9XBA6, A0A654F688
      Conserved Domains (2) summary
      cd01374
      Location:69 → 388
      KISc_CENP_E; Kinesin motor domain, CENP-E/KIP2-like subgroup
      pfam00225
      Location:75 → 388
      Kinesin; Kinesin motor domain

    2. NM_001202937.1 → NP_001189866.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189866.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XBA6, A0A654F688, F4J8L2
      Conserved Domains (3) summary
      COG1196
      Location:768 → 1038
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:372 → 1041
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      cd01374
      Location:69 → 388
      KISc_CENP_E; Kinesin motor domain, CENP-E/KIP2-like subgroup

    3. NM_001337969.1 → NP_001319527.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XBA6, A0A654F688, F4J8L2
      Conserved Domains (3) summary
      COG1196
      Location:768 → 1038
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:372 → 1041
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      cd01374
      Location:69 → 388
      KISc_CENP_E; Kinesin motor domain, CENP-E/KIP2-like subgroup

    4. NM_001337970.1 → NP_001325623.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J8L3, Q8GYK5, Q9C7B9, Q9LHL9
      UniProtKB/TrEMBL
      A0A178VNW3, A0A5S9XBA6, A0A654F688
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4J8L3.1

    Gene LinkOut

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