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    scpl17 serine carboxypeptidase-like 17 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820399, updated on 18-Sep-2024

    Summary

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    Official Symbol
    scpl17
    Official Full Name
    serine carboxypeptidase-like 17
    Primary source
    TAIR:AT3G12203
    Locus tag
    AT3G12203
    See related
    Araport:AT3G12203
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    serine carboxypeptidase-like 17
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    Genomic context

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    See scpl17 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    16
    Sequence:
    Chromosome: 3; NC_003074.8 (3891160..3894631, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Cornichon family protein Neighboring gene golgin family A protein Neighboring gene NIMA-related kinase 7 Neighboring gene DNA binding protein Neighboring gene serine carboxypeptidase-like 16 Neighboring gene serine carboxypeptidase-like 14

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Benzoylation and sinapoylation of glucosinolate R-groups in Arabidopsis. Lee S, et al. Plant J, 2012 Nov. PMID 22762247
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    NM_112056.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables serine-type carboxypeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    serine carboxypeptidase-like 17
    NP_187828.1
    • serine carboxypeptidase-like 17 (scpl17); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 16 (TAIR:AT3G12220.1); Has 3617 Blast hits to 3541 proteins in 365 species: Archae - 0; Bacteria - 182; Metazoa - 630; Fungi - 840; Plants - 1564; Viruses - 0; Other Eukaryotes - 401 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3891160..3894631 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337980.1 → NP_001327414.1  serine carboxypeptidase-like 17 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VD43, A0A1I9LS91

    2. NM_001337981.1 → NP_001327415.1  serine carboxypeptidase-like 17 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VD43, A0A1I9LS92

    3. NM_112056.3 → NP_187828.1  serine carboxypeptidase-like 17 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187828.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C7D6, Q9LHI6
      UniProtKB/TrEMBL
      A0A178VD43
      Conserved Domains (1) summary
      cl08270
      Location:8 → 437
      Peptidase_S10; Serine carboxypeptidase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C7D6.1

    Gene LinkOut

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