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    SYP81 syntaxin of plants 81 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841599, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SYP81
    Official Full Name
    syntaxin of plants 81
    Primary source
    TAIR:AT1G51740
    Locus tag
    AT1G51740
    See related
    Araport:AT1G51740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA ORTHOLOG OF YEAST UFE1 (UNKNOWN FUNCTION-ESSENTIAL 1); ATSYP81; ATUFE1; F19C24.5; F19C24_5; ORTHOLOG OF YEAST UFE1 (UNKNOWN FUNCTION-ESSENTIAL 1); syntaxin of plants 81; UFE1
    Summary
    member of SYP8 Gene Family
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    Genomic context

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    See SYP81 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (19188799..19191372)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ubiquitin-specific protease 6 Neighboring gene Amino acid dehydrogenase family protein Neighboring gene Ubiquitin-conjugating enzyme family protein Neighboring gene Tudor/PWWP/MBT superfamily protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SYNTAXIN OF PLANTS81 regulates root meristem activity and stem cell niche maintenance via ROS signaling. Wang M, et al. Plant Physiol, 2023 Feb 12. PMID 36427205, Free PMC Article
    2. The syntaxins SYP31 and SYP81 control ER-Golgi trafficking in the plant secretory pathway. Bubeck J, et al. Traffic, 2008 Sep. PMID 18764818
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. SYNTAXIN OF PLANTS81 regulates root meristem activity and stem cell niche maintenance via ROS signaling.
      Title: SYNTAXIN OF PLANTS81 regulates root meristem activity and stem cell niche maintenance via ROS signaling.
    Submit: New GeneRIF Correction

    General gene information

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    NM_104052.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein secretion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    syntaxin of plants 81
    NP_564597.1
    • syntaxin of plants 81 (SYP81); INVOLVED IN: vesicle-mediated transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: t-SNARE (InterPro:IPR010989), SNARE-complex protein Syntaxin-18 N-terminal (InterPro:IPR019529); Has 429 Blast hits to 426 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 200; Fungi - 82; Plants - 110; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      19188799..19191372
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333499.1 → NP_001323219.1  syntaxin of plants 81 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AWG1

    2. NM_104052.3 → NP_564597.1  syntaxin of plants 81 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564597.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P59277, Q84JQ3, Q9C8I2
      UniProtKB/TrEMBL
      A0A178W602, A0A5S9WNT5, A0A654EMN3
      Conserved Domains (2) summary
      pfam10496
      Location:6 → 86
      Syntaxin-18_N; SNARE-complex protein Syntaxin-18 N-terminus
      cl22856
      Location:222 → 280
      SNARE; SNARE motif
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P59277.2

    Gene LinkOut

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