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    Ubiquitin-conjugating enzyme family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841598, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ubiquitin-conjugating enzyme family protein
    Primary source
    TAIR:AT1G51730
    Locus tag
    AT1G51730
    See related
    Araport:AT1G51730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F19C24.6; F19C24_6
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    11
    Sequence:
    Chromosome: 1; NC_003070.9 (19186488..19188805, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene DOF zinc finger protein 1 Neighboring gene ubiquitin-specific protease 6 Neighboring gene Amino acid dehydrogenase family protein Neighboring gene syntaxin of plants 81 Neighboring gene Tudor/PWWP/MBT superfamily protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_104051.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    Ubiquitin-conjugating enzyme family protein
    NP_175584.1
    • Ubiquitin-conjugating enzyme family protein; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), RWD (InterPro:IPR006575); Has 930 Blast hits to 928 proteins in 205 species: Archae - 0; Bacteria - 2; Metazoa - 543; Fungi - 220; Plants - 66; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      19186488..19188805 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104051.5 → NP_175584.1  Ubiquitin-conjugating enzyme family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175584.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W8Z8, Q9C8I1
      Conserved Domains (1) summary
      pfam05773
      Location:6 → 122
      RWD; RWD domain
    Nucleotide Protein
    Heading Accession and Version

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