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    EMB140 EMBRYO DEFECTIVE 140 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828529, updated on 18-Sep-2024

    Summary

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    Official Symbol
    EMB140
    Official Full Name
    EMBRYO DEFECTIVE 140
    Primary source
    TAIR:AT4G24270
    Locus tag
    AT4G24270
    See related
    Araport:AT4G24270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    EMBRYO DEFECTIVE 140; T22A6.100; T22A6_100
    Summary
    A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.
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    Genomic context

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    See EMB140 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    15
    Sequence:
    Chromosome: 4; NC_003075.7 (12581518..12587458, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene glycosyl hydrolase 9A3 Neighboring gene homeobox protein Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene chloroplast heat shock protein 70-1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Serrate-Associated Protein 1, a splicing-related protein, promotes miRNA biogenesis in Arabidopsis. Li M, et al. New Phytol, 2021 Dec. PMID 34449907, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001341661.1
    NM_118560.4
    NM_179220.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables U6 snRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within embryo development ending in seed dormancy NAS
    Non-traceable Author Statement
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    EMBRYO DEFECTIVE 140
    NP_194158.3
    • EMBRYO DEFECTIVE 140 (EMB140); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lsm interaction (InterPro:IPR008669), RNA-processing protein, HAT helix (InterPro:IPR003107), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative (TAIR:AT5G45990.1); Has 6638 Blast hits to 6081 proteins in 560 species: Archae - 0; Bacteria - 845; Metazoa - 2454; Fungi - 1660; Plants - 947; Viruses - 0; Other Eukaryotes - 732 (source: NCBI BLink).
    NP_849551.1
    • EMBRYO DEFECTIVE 140 (EMB140); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lsm interaction (InterPro:IPR008669), RNA-processing protein, HAT helix (InterPro:IPR003107), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative (TAIR:AT5G45990.1); Has 6865 Blast hits to 6296 proteins in 569 species: Archae - 0; Bacteria - 876; Metazoa - 2538; Fungi - 1681; Plants - 1001; Viruses - 0; Other Eukaryotes - 769 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12581518..12587458 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341660.1 → NP_001328782.1  EMBRYO DEFECTIVE 140 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B5P4, A0A7G2EZX2
      Conserved Domains (3) summary
      smart00360
      Location:652 → 692
      RRM; RNA recognition motif
      COG0724
      Location:561 → 692
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      COG5107
      Location:53 → 567
      RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

    2. NM_118560.4 → NP_194158.3  EMBRYO DEFECTIVE 140 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194158.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UYW1, A0A5S9XVE4, F4JQ75
      Conserved Domains (4) summary
      smart00360
      Location:652 → 723
      RRM; RNA recognition motif
      COG0724
      Location:561 → 755
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      COG5107
      Location:53 → 567
      RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
      pfam05391
      Location:798 → 816
      Lsm_interact; Lsm interaction motif

    3. NM_179220.2 → NP_849551.1  EMBRYO DEFECTIVE 140 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849551.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UXQ4, F4JQ74
      Conserved Domains (5) summary
      smart00360
      Location:652 → 723
      RRM; RNA recognition motif
      COG0724
      Location:561 → 754
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      COG5107
      Location:53 → 567
      RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
      pfam05391
      Location:797 → 815
      Lsm_interact; Lsm interaction motif
      pfam05843
      Location:455 → 557
      Suf; Suppressor of forked protein (Suf)

    4. NM_001341661.1 → NP_001328783.1  EMBRYO DEFECTIVE 140 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B5P4, A0A7G2EZX2
      Conserved Domains (3) summary
      smart00360
      Location:652 → 692
      RRM; RNA recognition motif
      COG0724
      Location:561 → 692
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      COG5107
      Location:53 → 567
      RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
    Nucleotide Protein
    Heading Accession and Version

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