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    caldesmon-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828610, updated on 18-Sep-2024

    Summary

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    Official Full Name
    caldesmon-like protein
    Primary source
    TAIR:AT4G25070
    Locus tag
    AT4G25070
    See related
    Araport:AT4G25070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F24A6.14
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    16
    Sequence:
    Chromosome: 4; NC_003075.7 (12872379..12876734)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein family (UPF0497) Neighboring gene acyl carrier protein 4 Neighboring gene magnesium-protoporphyrin IX methyltransferase Neighboring gene Riboflavin synthase-like superfamily protein Neighboring gene Fe superoxide dismutase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001125579.2
    NM_118639.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in cytokinesis by cell plate formation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    caldesmon-like protein
    NP_001119051.1
    • unknown protein; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48860.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_194237.2
    • unknown protein; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48860.2); Has 14837 Blast hits to 10961 proteins in 1163 species: Archae - 189; Bacteria - 1924; Metazoa - 7665; Fungi - 1127; Plants - 653; Viruses - 80; Other Eukaryotes - 3199 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12872379..12876734
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001125579.2 → NP_001119051.1  caldesmon-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119051.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V607, A0A654FSI5, A0MFT2
      Conserved Domains (1) summary
      smart00787
      Location:408 → 521
      Spc7; Spc7 kinetochore protein

    2. NM_118639.3 → NP_194237.2  caldesmon-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194237.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V3Y2, A0A654FSI5, Q5XV72
      Conserved Domains (1) summary
      smart00787
      Location:406 → 519
      Spc7; Spc7 kinetochore protein
    Nucleotide Protein
    Heading Accession and Version

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