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    biotin/lipoyl attachment domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824779, updated on 18-Sep-2024

    Summary

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    Official Full Name
    biotin/lipoyl attachment domain-containing protein
    Primary source
    TAIR:AT3G56130
    Locus tag
    AT3G56130
    See related
    Araport:AT3G56130
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (20826576..20829270)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene prenylated RAB acceptor 1.B1 Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene DUF399 family protein, putative (DUF399 and DUF3411) Neighboring gene eukaryotic translation initiation factor 3C

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Non-Catalytic Subunits Facilitate Quaternary Organization of Plastidic Acetyl-CoA Carboxylase. Shivaiah KK, et al. Plant Physiol, 2020 Feb. PMID 31792149, Free PMC Article
    2. Biotin Attachment Domain-Containing Proteins Irreversibly Inhibit Acetyl CoA Carboxylase. Keereetaweep J, et al. Plant Physiol, 2018 May. PMID 29626162, Free PMC Article
    3. A Family of Negative Regulators Targets the Committed Step of de Novo Fatty Acid Biosynthesis. Salie MJ, et al. Plant Cell, 2016 Sep. PMID 27559025, Free PMC Article
    4. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Non-Catalytic Subunits Facilitate Quaternary Organization of Plastidic Acetyl-CoA Carboxylase.
      Title: Non-Catalytic Subunits Facilitate Quaternary Organization of Plastidic Acetyl-CoA Carboxylase.
    2. A role for BADC1(AT3G56130) in the irreversible feedback inhibition of acetyl CoA carboxylase and fatty acids accumulation in seeds.
      Title: Biotin Attachment Domain-Containing Proteins Irreversibly Inhibit Acetyl CoA Carboxylase.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001035794.1
    NM_001339769.1
    NM_001339770.1
    NM_115471.3
    NM_202717.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of fatty acid biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    biotin/lipoyl attachment domain-containing protein
    NP_001030871.1
    • biotin/lipoyl attachment domain-containing protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: Single hybrid motif superfamily protein (TAIR:AT1G52670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001319767.1
    • biotin/lipoyl attachment domain-containing protein; CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Single hybrid motif superfamily protein (TAIR:AT3G15690.2).
    NP_567035.1
    • biotin/lipoyl attachment domain-containing protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Single hybrid motif superfamily protein (TAIR:AT1G52670.1); Has 2050 Blast hits to 2050 proteins in 795 species: Archae - 23; Bacteria - 1613; Metazoa - 0; Fungi - 2; Plants - 110; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink).
    NP_974446.1
    • biotin/lipoyl attachment domain-containing protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: Single hybrid motif superfamily protein (TAIR:AT1G52670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20826576..20829270
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115471.3 → NP_567035.1  biotin/lipoyl attachment domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567035.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VL63, A0A384KVD0, Q93W03, Q9LYM8
      Conserved Domains (2) summary
      cd06850
      Location:196 → 271
      biotinyl_domain; The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, ...
      COG0511
      Location:101 → 271
      AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]

    2. NM_001035794.1 → NP_001030871.1  biotin/lipoyl attachment domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030871.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IY77
      Conserved Domains (1) summary
      cd06850
      Location:109 → 184
      biotinyl_domain; The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, ...

    3. NM_202717.1 → NP_974446.1  biotin/lipoyl attachment domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974446.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B9DFB7
      Conserved Domains (2) summary
      cd06850
      Location:120 → 195
      biotinyl_domain; The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, ...
      COG0511
      Location:25 → 195
      AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]

    4. NM_001339770.1 → NP_001327685.1  biotin/lipoyl attachment domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LT30, Q9LYM8

    5. NM_001339769.1 → NP_001319767.1  biotin/lipoyl attachment domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IY75, Q9LYM8
    Nucleotide Protein
    Heading Accession and Version

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