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    LAP3 Calcium-dependent phosphotriesterase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825122, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LAP3
    Official Full Name
    Calcium-dependent phosphotriesterase superfamily protein
    Primary source
    TAIR:AT3G59530
    Locus tag
    AT3G59530
    See related
    Araport:AT3G59530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    LESS ADHERENT POLLEN 3
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    Genomic context

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    See LAP3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (21993253..21995331)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene miscRNA Neighboring gene RHOMBOID-like protein 13 Neighboring gene Ribosomal L38e protein family Neighboring gene Rad21/Rec8-like family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. LAP3, a novel plant protein required for pollen development, is essential for proper exine formation. Dobritsa AA, et al. Sex Plant Reprod, 2009 Sep. PMID 20033437
    2. Phylogenetic and transcriptional analysis of a strictosidine synthase-like gene family in Arabidopsis thaliana reveals involvement in plant defence responses. Sohani MM, et al. Plant Biol (Stuttg), 2009 Jan. PMID 19121120
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. LAP3 is essential for pollen development and proper exine formation. [LAP3]
      Title: LAP3, a novel plant protein required for pollen development, is essential for proper exine formation.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001339986.1
    NM_115815.6
    NM_202733.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    NOT enables strictosidine synthase activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in pollen development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen exine formation IMP
    Inferred from Mutant Phenotype
    more info
    		  
    involved_in pollen exine formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Calcium-dependent phosphotriesterase superfamily protein
    NP_191512.1
    • Calcium-dependent phosphotriesterase superfamily protein; FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, pollen exine formation; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT5G22020.1); Has 1652 Blast hits to 1638 proteins in 407 species: Archae - 3; Bacteria - 693; Metazoa - 225; Fungi - 68; Plants - 481; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).
    NP_974462.1
    • Calcium-dependent phosphotriesterase superfamily protein; FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, pollen exine formation; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT5G22020.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21993253..21995331
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202733.3 → NP_974462.1  Calcium-dependent phosphotriesterase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974462.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84J97, Q9M1B4
      UniProtKB/TrEMBL
      A0A5S9XMJ1, A0A654FJ89
      Conserved Domains (2) summary
      COG3386
      Location:150 → 315
      YvrE; Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]
      cl22863
      Location:199 → 286
      Str_synth; Strictosidine synthase

    2. NM_115815.6 → NP_191512.1  Calcium-dependent phosphotriesterase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191512.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84J97, Q9M1B4
      UniProtKB/TrEMBL
      A0A5S9XMJ1, A0A654FJ89
      Conserved Domains (2) summary
      COG3386
      Location:150 → 315
      YvrE; Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]
      cl22863
      Location:199 → 286
      Str_synth; Strictosidine synthase

    3. NM_001339986.1 → NP_001325620.1  Calcium-dependent phosphotriesterase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84J97, Q9M1B4
      UniProtKB/TrEMBL
      A0A5S9XMJ1, A0A654FJ89
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M1B4.1

    Gene LinkOut

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