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    Thioredoxin superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825470, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Thioredoxin superfamily protein
    Primary source
    TAIR:AT3G62950
    Locus tag
    AT3G62950
    See related
    Araport:AT3G62950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (23266227..23267090)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Thioredoxin superfamily protein Neighboring gene Cysteine proteinases superfamily protein Neighboring gene Thioredoxin superfamily protein Neighboring gene zinc finger (C3HC4-type RING finger) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nitrate-Regulated Glutaredoxins Control Arabidopsis Primary Root Growth. Patterson K, et al. Plant Physiol, 2016 Feb. PMID 26662603, Free PMC Article
    2. Repression of the Arabidopsis thaliana jasmonic acid/ethylene-induced defense pathway by TGA-interacting glutaredoxins depends on their C-terminal ALWL motif. Zander M, et al. Mol Plant, 2012 Jul. PMID 22207719
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_116160.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of transcription by RNA polymerase II IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within response to nitrate IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Thioredoxin superfamily protein
    NP_191854.1
    • Thioredoxin superfamily protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Glutaredoxin (InterPro:IPR002109), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin subgroup (InterPro:IPR014025), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT2G47870.1); Has 1580 Blast hits to 1576 proteins in 382 species: Archae - 0; Bacteria - 356; Metazoa - 244; Fungi - 174; Plants - 738; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      23266227..23267090
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116160.3 → NP_191854.1  Thioredoxin superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191854.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C1JGP5, Q9LYC6
      UniProtKB/TrEMBL
      A0A178V8G0, A0A5S9XN63
      Conserved Domains (1) summary
      TIGR02189
      Location:4 → 103
      GlrX-like_plant; Glutaredoxin-like family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LYC6.1

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