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    DUF 10 agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 10) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832445, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DUF 10
    Official Full Name
    agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 10)
    Primary source
    TAIR:AT5G23800
    Locus tag
    AT5G23800
    See related
    Araport:AT5G23800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATDUF10; DOMAIN OF UNKNOWN FUNCTION 724 10; MRO11.16; MRO11_16
    Summary
    Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype
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    Genomic context

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    See DUF 10 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (8022216..8024795, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 9) Neighboring gene galactinol synthase 5 Neighboring gene amino acid permease 7 Neighboring gene MD-2-related lipid recognition domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of DUF724 gene family in Arabidopsis thaliana. Cao X, et al. Plant Mol Biol, 2010 Jan. PMID 19795213
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 10)
    NP_197769.1
    • DOMAIN OF UNKNOWN FUNCTION 724 10 (DUF 10); FUNCTIONS IN: RNA binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 8 (TAIR:AT5G23770.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      8022216..8024795 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122285.1 → NP_197769.1  agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 10) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197769.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FFA0
      UniProtKB/TrEMBL
      A0A5S9Y8Z6
      Conserved Domains (3) summary
      smart00743
      Location:83 → 138
      Agenet; Tudor-like domain present in plant sequences
      pfam05266
      Location:373 → 542
      DUF724; Protein of unknown function (DUF724)
      pfam05641
      Location:168 → 234
      Agenet; Agenet domain

    2. NM_001343826.1 → NP_001332204.1  agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 10) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BG96, A0A5S9Y8Z6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FFA0.1

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