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    Thioesterase/thiol ester dehydrase-isomerase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834890, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Thioesterase/thiol ester dehydrase-isomerase superfamily protein
    Primary source
    TAIR:AT5G48370
    Locus tag
    AT5G48370
    See related
    Araport:AT5G48370
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K23F3.9; K23F3_9
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (19598486..19600708, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene Actin-binding FH2 (formin homology 2) family protein Neighboring gene thioglucoside glucosidase 3 Neighboring gene BAK1-interacting receptor-like kinase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteomic analysis of leaf peroxisomal proteins in greening cotyledons of Arabidopsis thaliana. Fukao Y, et al. Plant Cell Physiol, 2002 Jul. PMID 12154131
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001085267.1
    NM_001344768.1
    NM_124212.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in peroxisome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Thioesterase/thiol ester dehydrase-isomerase superfamily protein
    NP_001078736.1
    • Thioesterase/thiol ester dehydrase-isomerase superfamily protein; CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683); BEST Arabidopsis thaliana protein match is: Thioesterase/thiol ester dehydrase-isomerase superfamily protein (TAIR:AT2G30720.1); Has 2835 Blast hits to 2174 proteins in 781 species: Archae - 49; Bacteria - 1954; Metazoa - 460; Fungi - 99; Plants - 81; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).
    NP_199648.1
    • Thioesterase/thiol ester dehydrase-isomerase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683); BEST Arabidopsis thaliana protein match is: Thioesterase/thiol ester dehydrase-isomerase superfamily protein (TAIR:AT2G30720.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19598486..19600708 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124212.4 → NP_199648.1  Thioesterase/thiol ester dehydrase-isomerase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199648.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UPM9, A0A5S9YCM3, A0A7G2FJ24, Q9LK77
      Conserved Domains (1) summary
      PLN02647
      Location:1 → 427
      PLN02647; acyl-CoA thioesterase

    2. NM_001085267.1 → NP_001078736.1  Thioesterase/thiol ester dehydrase-isomerase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078736.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UPM9, A0A5S9YCM3, A0A654G9F2, A8MR85
      Conserved Domains (1) summary
      PLN02647
      Location:1 → 426
      PLN02647; acyl-CoA thioesterase

    3. NM_001344768.1 → NP_001332741.1  Thioesterase/thiol ester dehydrase-isomerase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1R7T3J1
    Nucleotide Protein
    Heading Accession and Version

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