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    VQ motif-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835464, updated on 18-Sep-2024

    Summary

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    Official Full Name
    VQ motif-containing protein
    Primary source
    TAIR:AT5G53830
    Locus tag
    AT5G53830
    See related
    Araport:AT5G53830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MGN6.22; MGN6_22; MPK3/6-targeted VQP 3; MVQ3
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (21856948..21858102)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene O-methyltransferase family protein Neighboring gene pseudo Neighboring gene Late embryogenesis abundant protein (LEA) family protein Neighboring gene F-box/RNI-like/FBD-like domains-containing protein Neighboring gene haloacid dehalogenase-like hydrolase family protein Neighboring gene embryo defective 2737

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Structural and functional analysis of VQ motif-containing proteins in Arabidopsis as interacting proteins of WRKY transcription factors. Cheng Y, et al. Plant Physiol, 2012 Jun. PMID 22535423, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_124762.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    VQ motif-containing protein
    NP_200194.1
    • VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT3G15300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21856948..21858102
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124762.3 → NP_200194.1  VQ motif-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200194.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FHZ3
      UniProtKB/TrEMBL
      A0A178U9R4, A0A5S9YDR7, A0A654GAN3
      Conserved Domains (1) summary
      pfam05678
      Location:46 → 66
      VQ; VQ motif
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FHZ3.1

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