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    Afadin/alpha-actinin-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835847, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Afadin/alpha-actinin-binding protein
    Primary source
    TAIR:AT5G57410
    Locus tag
    AT5G57410
    See related
    Araport:AT5G57410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MSF19.7; MSF19_7
    Summary
    Encodes a microtubule-associated protein.
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    17
    Sequence:
    Chromosome: 5; NC_003076.8 (23264314..23267905, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene AINTEGUMENTA-like 5 Neighboring gene uncharacterized protein Neighboring gene indole-3-acetic acid inducible 33 Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Purification and characterization of novel microtubule-associated proteins from Arabidopsis cell suspension cultures. Hamada T, et al. Plant Physiol, 2013 Dec. PMID 24134884, Free PMC Article
    2. Proteome changes in Arabidopsis thaliana roots upon exposure to Cd2+. Roth U, et al. J Exp Bot, 2006. PMID 17075075
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001037012.2
    NM_125124.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    acts_upstream_of_or_within response to cadmium ion IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of microtubule associated complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Afadin/alpha-actinin-binding protein
    NP_001032089.1
    • Afadin/alpha-actinin-binding protein; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Afadin/alpha-actinin-binding (InterPro:IPR021622); BEST Arabidopsis thaliana protein match is: Afadin/alpha-actinin-binding protein (TAIR:AT2G18876.1); Has 9027 Blast hits to 6961 proteins in 616 species: Archae - 59; Bacteria - 725; Metazoa - 4928; Fungi - 724; Plants - 295; Viruses - 11; Other Eukaryotes - 2285 (source: NCBI BLink).
    NP_001190560.1
    • Afadin/alpha-actinin-binding protein; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Afadin/alpha-actinin-binding (InterPro:IPR021622); BEST Arabidopsis thaliana protein match is: Afadin/alpha-actinin-binding protein (TAIR:AT2G18876.1).
    NP_568857.1
    • Afadin/alpha-actinin-binding protein; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Afadin/alpha-actinin-binding (InterPro:IPR021622); BEST Arabidopsis thaliana protein match is: Afadin/alpha-actinin-binding protein (TAIR:AT2G18876.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23264314..23267905 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203631.1 → NP_001190560.1  Afadin/alpha-actinin-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190560.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654GBX0, F4KAN9
      Conserved Domains (1) summary
      pfam11559
      Location:31 → 178
      ADIP; Afadin- and alpha -actinin-Binding

    2. NM_125124.4 → NP_568857.1  Afadin/alpha-actinin-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568857.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UGB1, A0A5S9YFI7, Q5EAE7
      Conserved Domains (2) summary
      TIGR02168
      Location:69 → 371
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam11559
      Location:31 → 178
      ADIP; Afadin- and alpha -actinin-Binding

    3. NM_001037012.2 → NP_001032089.1  Afadin/alpha-actinin-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001032089.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UGB1, F4KBZ2
      Conserved Domains (1) summary
      pfam11559
      Location:2 → 138
      ADIP; Afadin- and alpha -actinin-Binding
    Nucleotide Protein
    Heading Accession and Version

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