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    golgi-to-ER traffic-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836442, updated on 18-Sep-2024

    Summary

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    Official Full Name
    golgi-to-ER traffic-like protein
    Primary source
    TAIR:AT5G63220
    Locus tag
    AT5G63220
    See related
    Araport:AT5G63220
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MDC12.19; MDC12_19
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    12
    Sequence:
    Chromosome: 5; NC_003076.8 (25353018..25355535, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Pectin lyase-like superfamily protein Neighboring gene MA3 domain-containing protein Neighboring gene ncRNA Neighboring gene tetratricopeptide repeat (TPR)-containing protein Neighboring gene Carbohydrate-binding X8 domain superfamily protein Neighboring gene Carbohydrate-binding X8 domain superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Loss of GET pathway orthologs in Arabidopsis thaliana causes root hair growth defects and affects SNARE abundance. Xing S, et al. Proc Natl Acad Sci U S A, 2017 Feb 21. PMID 28096354, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001345583.1
    NM_001345584.1
    NM_125717.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein insertion into ER membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within root hair elongation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    golgi-to-ER traffic-like protein
    NP_201127.2
    • unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0363 (InterPro:IPR007317); Has 304 Blast hits to 301 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 121; Plants - 35; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25353018..25355535 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125717.6 → NP_201127.2  golgi-to-ER traffic-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201127.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6GKV1, Q9FMK1
      UniProtKB/TrEMBL
      A0A178UDZ4, A0A7G2FPE2
      Conserved Domains (1) summary
      pfam04190
      Location:46 → 320
      DUF410; Protein of unknown function (DUF410)

    2. NM_001345583.1 → NP_001332494.1  golgi-to-ER traffic-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BH44, A0A7G2FPE2

    3. NM_001345584.1 → NP_001332493.1  golgi-to-ER traffic-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BH52, A0A7G2FPE2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6GKV1.1

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