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    Spc97 / Spc98 family of spindle pole body (SBP) component [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823458, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Spc97 / Spc98 family of spindle pole body (SBP) component
    Primary source
    TAIR:AT3G43610
    Locus tag
    AT3G43610
    See related
    Araport:AT3G43610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    15
    Sequence:
    Chromosome: 3; NC_003074.8 (15517576..15524096, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene zinc knuckle (CCHC-type) family protein Neighboring gene aldehyde oxidase 2 Neighboring gene pseudo Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001339100.1
    NM_114229.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables gamma-tubulin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in microtubule nucleation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in microtubule organizing center IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in spindle pole IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Spc97 / Spc98 family of spindle pole body (SBP) component
    NP_189947.2
    • Spc97 / Spc98 family of spindle pole body (SBP) component; FUNCTIONS IN: tubulin binding; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: chloroplast, spindle pole, microtubule organizing center; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: spindle pole body component 98 (TAIR:AT5G06680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      15517576..15524096 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339101.1 → NP_001325538.1  Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LLJ4, A0A654FCE9

    2. NM_114229.3 → NP_189947.2  Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189947.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FCE9, F4IZ65
      Conserved Domains (1) summary
      pfam04130
      Location:819 → 1099
      Spc97_Spc98; Spc97 / Spc98 family

    3. NM_001339100.1 → NP_001325537.1  Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LLJ3, A0A654FCE9
    Nucleotide Protein
    Heading Accession and Version

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