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    tudor domain protein (DUF1767) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832117, updated on 18-Sep-2024

    Summary

    Official Full Name
    tudor domain protein (DUF1767)
    Primary source
    TAIR:AT5G19950
    Locus tag
    AT5G19950
    See related
    Araport:AT5G19950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28I16.100; F28I16_100
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    Genomic context

    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (6740777..6743850, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene integral membrane protein (Protein of unknown function DUF92, transmembrane) Neighboring gene Plastid-lipid associated protein PAP / fibrillin family protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene GRAS family transcription factor family protein

    Interactions

    General gene information

    NM_122002.3
    NM_180523.3
    NM_203084.2

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in mitochondrion PubMed 
    located_in nucleus  

    General protein information

    Preferred Names
    tudor domain protein (DUF1767)
    NP_568387.1
    • CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1767 (InterPro:IPR013894); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1767) (TAIR:AT5G63540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_850854.1
    • CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1767 (InterPro:IPR013894); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1767) (TAIR:AT5G63540.1); Has 573 Blast hits to 514 proteins in 137 species: Archae - 0; Bacteria - 22; Metazoa - 276; Fungi - 58; Plants - 111; Viruses - 3; Other Eukaryotes - 103 (source: NCBI BLink).
    NP_974813.1
    • CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1767 (InterPro:IPR013894); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1767) (TAIR:AT5G63540.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6740777..6743850 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180523.3NP_850854.1  tudor domain protein (DUF1767) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850854.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UI80, A0A654G2V3, Q8L502
      Conserved Domains (1) summary
      pfam08585
      Location:32185
      RMI1_N; RecQ mediated genome instability protein
    2. NM_203084.2NP_974813.1  tudor domain protein (DUF1767) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974813.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UI80, F4K2P4
      Conserved Domains (1) summary
      pfam08585
      Location:32185
      RMI1_N; RecQ mediated genome instability protein
    3. NM_122002.3NP_568387.1  tudor domain protein (DUF1767) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568387.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UI80, A0A654G2V3, Q8L502
      Conserved Domains (1) summary
      pfam08585
      Location:32185
      RMI1_N; RecQ mediated genome instability protein
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