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    MuDR family transposase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841415, updated on 18-Sep-2024

    Summary

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    Official Full Name
    MuDR family transposase
    Primary source
    TAIR:AT1G49920
    Locus tag
    AT1G49920
    See related
    Araport:AT1G49920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T18C15.1; T18C15_1
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (18481584..18484393, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene C2H2 type zinc finger transcription factor family Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene alanine-tRNA ligase Neighboring gene ncRNA Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001333404.1
    NM_103879.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    MuDR family transposase
    NP_001319184.1
    • MuDR family transposase; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527), Transposase, MuDR, plant (InterPro:IPR004332); BEST Arabidopsis thaliana protein match is: MuDR family transposase (TAIR:AT1G64260.1); Has 26408 Blast hits to 9010 proteins in 522 species: Archae - 72; Bacteria - 1697; Metazoa - 8826; Fungi - 3151; Plants - 2780; Viruses - 610; Other Eukaryotes - 9272 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      18481584..18484393 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333404.1 → NP_001319184.1  MuDR family transposase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WLW1, A0A384KML1, A0A7G2E1N8, Q9C702
      Conserved Domains (2) summary
      PLN03097
      Location:357 → 689
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
      pfam03108
      Location:179 → 243
      DBD_Tnp_Mut; MuDR family transposase

    2. NM_103879.3 → NP_175414.1  MuDR family transposase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175414.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WLW1, A0A384KML1, A0A7G2E1N8, Q9C702
      Conserved Domains (2) summary
      PLN03097
      Location:357 → 689
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
      pfam03108
      Location:179 → 243
      DBD_Tnp_Mut; MuDR family transposase
    Nucleotide Protein
    Heading Accession and Version

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