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    CBS domain protein with a domain protein (DUF21) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827065, updated on 18-Sep-2024

    Summary

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    Official Full Name
    CBS domain protein with a domain protein (DUF21)
    Primary source
    TAIR:AT4G14240
    Locus tag
    AT4G14240
    See related
    Araport:AT4G14240
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL3160C; FCAALL.149
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    12
    Sequence:
    Chromosome: 4; NC_003075.7 (8204347..8207483, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene CBS domain protein with a domain protein (DUF21) Neighboring gene structural constituent of ribosome protein Neighboring gene structural constituent of ribosome protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A tonoplast-localized magnesium transporter is crucial for stomatal opening in Arabidopsis under high Mg(2+) conditions. Inoue SI, et al. New Phytol, 2022 Nov. PMID 35976788, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001036556.2
    NM_001340909.1
    NM_117501.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables magnesium ion binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in magnesium ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of stomatal opening IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plant-type vacuole membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CBS domain protein with a domain protein (DUF21)
    NP_001031633.2
    • CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein with a domain of unknown function (DUF21) (TAIR:AT4G14230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_193160.3
    • CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein with a domain of unknown function (DUF21) (TAIR:AT4G14230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8204347..8207483 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117501.5 → NP_193160.3  CBS domain protein with a domain protein (DUF21) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193160.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23282, Q66GK0, Q67XQ0, Q680W1
      UniProtKB/TrEMBL
      A0A178V1F1, A0A5S9XSF6
      Conserved Domains (1) summary
      COG1253
      Location:44 → 428
      TlyC; Hemolysin or related protein, contains CBS domains [General function prediction only]

    2. NM_001036556.2 → NP_001031633.2  CBS domain protein with a domain protein (DUF21) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031633.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q67XQ0
      Conserved Domains (2) summary
      cd04590
      Location:230 → 407
      CBS_pair_CorC_HlyC_assoc; This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in ...
      pfam01595
      Location:37 → 204
      DUF21; Domain of unknown function DUF21

    3. NM_001340909.1 → NP_001328231.1  CBS domain protein with a domain protein (DUF21) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B407
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q67XQ0.1

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