U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    GDA1/CD39 nucleoside phosphatase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814826, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    GDA1/CD39 nucleoside phosphatase family protein
    Primary source
    TAIR:AT2G02970
    Locus tag
    AT2G02970
    See related
    Araport:AT2G02970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    APY6; apyrase 6; AtAPY6; T17M13.14; T17M13_14
    Summary
    Encodes a putative apyrase involved in pollen exine pattern formation and anther dehiscence.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 2
    Exon count:
    8
    Sequence:
    Chromosome: 2; NC_003071.7 (864997..868292, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene phytochrome kinase substrate 1 Neighboring gene maternal effect embryo arrest 12 Neighboring gene RING/FYVE/PHD zinc finger superfamily protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene ribonuclease 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Co-regulation of exine wall patterning, pollen fertility and anther dehiscence by Arabidopsis apyrases 6 and 7. Yang J, et al. Plant Physiol Biochem, 2013 Aug. PMID 23728389
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_126349.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables apyrase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within anther dehiscence IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen exine formation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen exine formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    GDA1/CD39 nucleoside phosphatase family protein
    NP_565293.1
    • GDA1/CD39 nucleoside phosphatase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: GDA1/CD39 nucleoside phosphatase family protein (TAIR:AT1G14230.1); Has 1462 Blast hits to 1454 proteins in 233 species: Archae - 0; Bacteria - 37; Metazoa - 611; Fungi - 316; Plants - 335; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      864997..868292 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126349.3 → NP_565293.1  GDA1/CD39 nucleoside phosphatase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565293.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80612, Q56WA2, Q94EZ2
      UniProtKB/TrEMBL
      A0A178VR02, A0A5S9WWV4
      Conserved Domains (1) summary
      cl17037
      Location:86 → 483
      NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O80612.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools