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    LNO1 Nuclear pore complex protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842002, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LNO1
    Official Full Name
    Nuclear pore complex protein
    Primary source
    TAIR:AT1G55540
    Locus tag
    AT1G55540
    See related
    Araport:AT1G55540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    embryo defective 1011; LONO 1; T5A14.22
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    Genomic context

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    See LNO1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    18
    Sequence:
    Chromosome: 1; NC_003070.9 (20734446..20743188, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene uncharacterized protein Neighboring gene 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. LONO1 encoding a nucleoporin is required for embryogenesis and seed viability in Arabidopsis. Braud C, et al. Plant Physiol, 2012 Oct. PMID 22898497, Free PMC Article
    2. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
    3. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. LNO1 (At1G55540) is required for seed viability in Arabidopsis.
      Title: LONO1 encoding a nucleoporin is required for embryogenesis and seed viability in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001124027.2
    NM_104429.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables structural constituent of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within embryo development ending in seed dormancy NAS
    Non-traceable Author Statement
    more info
    		  
    acts_upstream_of_or_within zygote asymmetric cell division IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Nuclear pore complex protein
    NP_001117499.2
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_564694.2
    • Has 139490 Blast hits to 62156 proteins in 2603 species: Archae - 205; Bacteria - 38902; Metazoa - 46426; Fungi - 17828; Plants - 10200; Viruses - 1892; Other Eukaryotes - 24037 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20734446..20743188 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104429.4 → NP_564694.2  Nuclear pore complex protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564694.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EIR1
      Conserved Domains (2) summary
      pfam05109
      Location:1207 → 1648
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      sd00039
      Location:100 → 144
      7WD40; WD40 repeat [structural motif]

    2. NM_001124027.2 → NP_001117499.2  Nuclear pore complex protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117499.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I1T6, F4I1T7, Q94C88, Q9ZVV0
      UniProtKB/TrEMBL
      A0A654EIR1
      Conserved Domains (2) summary
      pfam05109
      Location:1210 → 1651
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      sd00039
      Location:100 → 144
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4I1T7.1

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