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    BRG2 zinc ion binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844252, updated on 18-Sep-2024

    Summary

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    Official Symbol
    BRG2
    Official Full Name
    zinc ion binding protein
    Primary source
    TAIR:AT1G79110
    Locus tag
    AT1G79110
    See related
    Araport:AT1G79110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    BOI-related gene 2; YUP8H12R.27; YUP8H12R_27
    Summary
    Encodes one of the BRGs (BOI-related gene) involved in resistance to Botrytis cinerea.
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    Genomic context

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    See BRG2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (29759030..29760789)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene arginine/serine-rich protein-like protein Neighboring gene uncharacterized protein Neighboring gene Ubiquitin carboxyl-terminal hydrolase family protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis RING Domain Protein BOI Inhibits Flowering via CO-dependent and CO-independent Mechanisms. Nguyen KT, et al. Mol Plant, 2015 Dec 7. PMID 26298008
    2. The Arabidopsis Botrytis Susceptible1 Interactor defines a subclass of RING E3 ligases that regulate pathogen and stress responses. Luo H, et al. Plant Physiol, 2010 Dec. PMID 20921156, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. BOIs and CO antagonistically regulate flowering through FT and SOC1.
      Title: The Arabidopsis RING Domain Protein BOI Inhibits Flowering via CO-dependent and CO-independent Mechanisms.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001334871.1
    NM_106562.2
    NM_202445.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of programmed cell death IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    zinc ion binding protein
    NP_565200.1
    • zinc ion binding; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT3G12920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974174.1
    • zinc ion binding; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT3G12920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29759030..29760789
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202445.3 → NP_974174.1  zinc ion binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974174.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WVR5, A0A654EQB9
      Conserved Domains (2) summary
      pfam13920
      Location:306 → 341
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
      cl07863
      Location:149 → 226
      Phasin; Poly(hydroxyalcanoate) granule associated protein (phasin)

    2. NM_001334871.1 → NP_001322856.1  zinc ion binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AV99, A0A5S9WVR5

    3. NM_106562.2 → NP_565200.1  zinc ion binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565200.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IDI6, F4IDI7, O64540, Q0WLS3, Q0WLZ6, Q8LAY3
      UniProtKB/TrEMBL
      A0A5S9WVR5
      Conserved Domains (2) summary
      pfam13920
      Location:309 → 344
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
      cl07863
      Location:149 → 229
      Phasin; Poly(hydroxyalcanoate) granule associated protein (phasin)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4IDI6.1

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