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    Regulator of Vps4 activity in the MVB pathway protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840321, updated on 18-Sep-2024

    Summary

    Official Full Name
    Regulator of Vps4 activity in the MVB pathway protein
    Primary source
    TAIR:AT1G34220
    Locus tag
    AT1G34220
    See related
    Araport:AT1G34220
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F23M19.10; F23M19_10
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    Genomic context

    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (12462849..12466089, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene NAC domain containing protein 17 Neighboring gene Glyceraldehyde-3-phosphate dehydrogenase-like family protein Neighboring gene somatic embryogenesis receptor-like kinase 2 Neighboring gene pseudo Neighboring gene pseudo

    General gene information

    NM_103145.4
    NM_202232.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within endosomal transport IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    acts_upstream_of_or_within pollen development IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in nucleus HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    Regulator of Vps4 activity in the MVB pathway protein
    NP_174684.2
    • Regulator of Vps4 activity in the MVB pathway protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT4G35730.1); Has 2168 Blast hits to 1128 proteins in 249 species: Archae - 0; Bacteria - 95; Metazoa - 396; Fungi - 227; Plants - 323; Viruses - 1; Other Eukaryotes - 1126 (source: NCBI BLink).
    NP_973961.1
    • Regulator of Vps4 activity in the MVB pathway protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT4G35730.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      12462849..12466089 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103145.4NP_174684.2  Regulator of Vps4 activity in the MVB pathway protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174684.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4HUX0, Q7XA80
      Conserved Domains (1) summary
      pfam03398
      Location:18212
      Ist1; Regulator of Vps4 activity in the MVB pathway
    2. NM_202232.2NP_973961.1  Regulator of Vps4 activity in the MVB pathway protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973961.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WJ72, Q9XIC8
      Conserved Domains (1) summary
      pfam03398
      Location:18182
      Ist1; Regulator of Vps4 activity in the MVB pathway