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    IQD18 IQ-domain 18 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839394, updated on 18-Sep-2024

    Summary

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    Official Symbol
    IQD18
    Official Full Name
    IQ-domain 18
    Primary source
    TAIR:AT1G01110
    Locus tag
    AT1G01110
    See related
    Araport:AT1G01110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    IQ-domain 18; T25K16.10; T25K16_10
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    Genomic context

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    See IQD18 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (51953..54737)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pyruvate dehydrogenase E1 alpha Neighboring gene 60S acidic ribosomal protein family Neighboring gene 3-ketoacyl-CoA synthase 1 Neighboring gene CBL-interacting Serine/Threonine-kinase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001123732.2
    NM_001331250.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    IQ-domain 18
    NP_001117204.1
    • IQ-domain 18 (IQD18); FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 17 (TAIR:AT4G00820.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001318900.1
    • IQ-domain 18 (IQD18); FUNCTIONS IN: molecular_function unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: IQ-domain 17 (TAIR:AT4G00820.1); Has 1112 Blast hits to 678 proteins in 50 species: Archae - 0; Bacteria - 10; Metazoa - 109; Fungi - 16; Plants - 528; Viruses - 4; Other Eukaryotes - 445 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      51953..54737
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001123732.2 → NP_001117204.1  IQ-domain 18 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117204.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B3H705, Q8LEL3, Q9MAM4
      UniProtKB/TrEMBL
      A0A178W9B6, A0A178WBA3
      Conserved Domains (2) summary
      pfam13178
      Location:374 → 470
      DUF4005; Protein of unknown function (DUF4005)
      cd22307
      Location:93 → 173
      Adgb_C_mid-like; C-terminal middle region of Androglobins (Adgbs) and related proteins; including permuted globin domain and IQ motif

    2. NM_001331250.1 → NP_001318900.1  IQ-domain 18 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3H705
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9MAM4.1

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