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    Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837181, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT1G06710
    Locus tag
    AT1G06710
    See related
    Araport:AT1G06710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F4H5.20; F4H5_20; mitochondrial stability factor 1; MTSF1
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (2055745..2060429, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene photosystem II subunit P-1 Neighboring gene NAD(P)-linked oxidoreductase superfamily protein Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene pfkB-like carbohydrate kinase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The pentatricopeptide repeat MTSF1 protein stabilizes the nad4 mRNA in Arabidopsis mitochondria. Haïli N, et al. Nucleic Acids Res, 2013 Jul. PMID 23658225, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_100548.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within mitochondrial mRNA modification IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of mitochondrial mRNA stability IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrial membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_172156.2
    • Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1); Has 67223 Blast hits to 14860 proteins in 308 species: Archae - 6; Bacteria - 56; Metazoa - 772; Fungi - 1057; Plants - 62952; Viruses - 0; Other Eukaryotes - 2380 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2055745..2060429 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331662.1 → NP_001321189.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQ62, A0A5S9SYV2, A0A654E7K1, A0A7G2DSB9
      Conserved Domains (3) summary
      PLN03218
      Location:520 → 911
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:520 → 547
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:921 → 966
      PPR_2; PPR repeat family

    2. NM_001331658.1 → NP_001321185.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQ62, A0A5S9SYV2, A0A654E7K1, A0A7G2DSB9
      Conserved Domains (3) summary
      PLN03218
      Location:520 → 911
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:520 → 547
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:921 → 966
      PPR_2; PPR repeat family

    3. NM_001331659.1 → NP_001321182.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQ62, A0A5S9SYV2, A0A654E7K1, A0A7G2DSB9
      Conserved Domains (3) summary
      PLN03218
      Location:520 → 911
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:520 → 547
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:921 → 966
      PPR_2; PPR repeat family

    4. NM_001331656.1 → NP_001321187.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQ62, A0A5S9SYV2, A0A654E7K1, A0A7G2DSB9
      Conserved Domains (3) summary
      PLN03218
      Location:520 → 911
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:520 → 547
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:921 → 966
      PPR_2; PPR repeat family

    5. NM_001331661.1 → NP_001321188.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQ62, A0A5S9SYV2, A0A654E7K1, A0A7G2DSB9
      Conserved Domains (3) summary
      PLN03218
      Location:520 → 911
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:520 → 547
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:921 → 966
      PPR_2; PPR repeat family

    6. NM_001331660.1 → NP_001321183.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQ62, A0A5S9SYV2, A0A654E7K1, A0A7G2DSB9
      Conserved Domains (3) summary
      PLN03218
      Location:520 → 911
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:520 → 547
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:921 → 966
      PPR_2; PPR repeat family

    7. NM_001331657.1 → NP_001321184.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQ62, A0A5S9SYV2, A0A654E7K1, A0A7G2DSB9
      Conserved Domains (3) summary
      PLN03218
      Location:520 → 911
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:520 → 547
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:921 → 966
      PPR_2; PPR repeat family

    8. NM_001331655.1 → NP_001321186.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQ62, A0A5S9SYV2, A0A654E7K1, A0A7G2DSB9
      Conserved Domains (3) summary
      PLN03218
      Location:520 → 911
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:520 → 547
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:921 → 966
      PPR_2; PPR repeat family

    9. NM_001331648.1 → NP_001321178.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQ62, A0A5S9SYV2, A0A654E7K1, A0A7G2DSB9
      Conserved Domains (3) summary
      PLN03218
      Location:520 → 911
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:520 → 547
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:921 → 966
      PPR_2; PPR repeat family

    10. NM_001331647.1 → NP_001321177.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQ62, A0A5S9SYV2, A0A654E7K1, A0A7G2DSB9
      Conserved Domains (3) summary
      PLN03218
      Location:520 → 911
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:520 → 547
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:921 → 966
      PPR_2; PPR repeat family

    11. NM_001331646.1 → NP_001321176.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IDR2, Q5S1W1, Q9M9X9
      UniProtKB/TrEMBL
      A0A5S9SYV2, A0A654E7K1

    12. NM_001331645.1 → NP_001321175.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IDR2, Q5S1W1, Q9M9X9
      UniProtKB/TrEMBL
      A0A5S9SYV2, A0A654E7K1

    13. NM_001331653.1 → NP_001321174.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IDR2, Q5S1W1, Q9M9X9
      UniProtKB/TrEMBL
      A0A5S9SYV2, A0A654E7K1

    14. NM_001331652.1 → NP_001321181.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IDR2, Q5S1W1, Q9M9X9
      UniProtKB/TrEMBL
      A0A5S9SYV2, A0A654E7K1

    15. NM_001331651.1 → NP_001321180.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IDR2, Q5S1W1, Q9M9X9
      UniProtKB/TrEMBL
      A0A5S9SYV2, A0A654E7K1

    16. NM_001331650.1 → NP_001321179.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IDR2, Q5S1W1, Q9M9X9
      UniProtKB/TrEMBL
      A0A5S9SYV2, A0A654E7K1

    17. NM_001331649.1 → NP_001321173.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IDR2, Q5S1W1, Q9M9X9
      UniProtKB/TrEMBL
      A0A5S9SYV2, A0A654E7K1

    18. NM_001331654.1 → NP_001321172.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQ62, A0A5S9SYV2, A0A654E7K1, A0A7G2DSB9
      Conserved Domains (3) summary
      PLN03218
      Location:520 → 911
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:520 → 547
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:921 → 966
      PPR_2; PPR repeat family

    19. NM_100548.2 → NP_172156.2  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172156.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQ62, A0A5S9SYV2, A0A654E7K1, A0A7G2DSB9
      Conserved Domains (3) summary
      PLN03218
      Location:520 → 911
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:520 → 547
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:921 → 966
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M9X9.1

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