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    RRA3 Nucleotide-diphospho-sugar transferase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838519, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RRA3
    Official Full Name
    Nucleotide-diphospho-sugar transferase family protein
    Primary source
    TAIR:AT1G19360
    Locus tag
    AT1G19360
    See related
    Araport:AT1G19360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F18O14.8; F18O14_8; reduced residual arabinose 3
    Summary
    Encodes an arabinosyltransferase that modifies extensin proteins in root hair cells.
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    Genomic context

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    See RRA3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (6690399..6692566, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene histone deacetylase complex subunit Neighboring gene Methyltransferase MT-A70 family protein Neighboring gene Brassinosteroid signaling positive regulator (BZR1) family protein Neighboring gene uncharacterized protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. O-glycosylated cell wall proteins are essential in root hair growth. Velasquez SM, et al. Science, 2011 Jun 17. PMID 21680836
    2. Label-free protein quantification for plant Golgi protein localization and abundance. Nikolovski N, et al. Plant Physiol, 2014 Oct. PMID 25122472, Free PMC Article
    3. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
    4. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
    5. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    NM_101793.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within root hair cell development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in Golgi medial cisterna HDA PubMed 
    located_in Golgi medial cisterna IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in endosome HDA PubMed 
    located_in trans-Golgi network HDA PubMed 

    General protein information

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    Preferred Names
    Nucleotide-diphospho-sugar transferase family protein
    NP_564082.1
    • Nucleotide-diphospho-sugar transferase family protein; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT1G75110.1); Has 297 Blast hits to 291 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 280; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6690399..6692566 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332391.1 → NP_001321670.1  Nucleotide-diphospho-sugar transferase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LN62
      UniProtKB/TrEMBL
      A0A178WBS7, A0A5S9V3G7
      Conserved Domains (1) summary
      pfam03407
      Location:182 → 405
      Nucleotid_trans; Nucleotide-diphospho-sugar transferase

    2. NM_101793.4 → NP_564082.1  Nucleotide-diphospho-sugar transferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564082.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LN62
      UniProtKB/TrEMBL
      A0A178WBS7, A0A5S9V3G7
      Conserved Domains (1) summary
      pfam03407
      Location:182 → 405
      Nucleotid_trans; Nucleotide-diphospho-sugar transferase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LN62.1

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