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    histone H2A deubiquitinase (DUF3755) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819946, updated on 18-Sep-2024

    Summary

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    Official Full Name
    histone H2A deubiquitinase (DUF3755)
    Primary source
    TAIR:AT3G07565
    Locus tag
    AT3G07565
    See related
    Araport:AT3G07565
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (2413623..2416284)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene integrator complex subunit Neighboring gene Actin-binding FH2 (formin homology 2) family protein Neighboring gene RNI-like superfamily protein Neighboring gene peroxin 13 Neighboring gene fanconi anemia group D2 protein Neighboring gene ncRNA Neighboring gene Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis scaffold protein RACK1A interacts with diverse environmental stress and photosynthesis related proteins. Kundu N, et al. Plant Signal Behav, 2013 May. PMID 23435172, Free PMC Article
    2. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001035580.1
    NM_001035581.3
    NM_001202906.1
    NM_111635.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    histone H2A deubiquitinase (DUF3755)
    NP_001030657.1
    • FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3755) (TAIR:AT1G10820.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001030658.1
    • FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Protein of unknown function DUF3755 (InterPro:IPR022228); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3755) (TAIR:AT1G10820.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001189835.1
    • Protein of unknown function (DUF3755); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3755 (InterPro:IPR022228); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3755) (TAIR:AT1G10820.2).
    NP_187413.1
    • FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Protein of unknown function DUF3755 (InterPro:IPR022228); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3755) (TAIR:AT1G10820.2); Has 164 Blast hits to 162 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2413623..2416284
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111635.4 → NP_187413.1  histone H2A deubiquitinase (DUF3755) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187413.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VJQ1, A0A384KQF0, A0A7G2EN67, Q84WV3
      Conserved Domains (2) summary
      cd00167
      Location:66 → 110
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      pfam12579
      Location:199 → 232
      DUF3755; Protein of unknown function (DUF3755)

    2. NM_001035581.3 → NP_001030658.1  histone H2A deubiquitinase (DUF3755) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030658.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VJX4, A0A384LA80, A0A7G2EN61, F4JEH8
      Conserved Domains (2) summary
      cd00167
      Location:66 → 110
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      pfam12579
      Location:200 → 233
      DUF3755; Protein of unknown function (DUF3755)

    3. NM_001202906.1 → NP_001189835.1  histone H2A deubiquitinase (DUF3755) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189835.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EN61, F4JEH7
      Conserved Domains (3) summary
      smart00717
      Location:64 → 110
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd00167
      Location:66 → 110
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      pfam12579
      Location:212 → 242
      DUF3755; Protein of unknown function (DUF3755)

    4. NM_001035580.1 → NP_001030657.1  histone H2A deubiquitinase (DUF3755) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030657.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JEI0, Q9SRQ9
      Conserved Domains (2) summary
      smart00717
      Location:64 → 110
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd00167
      Location:66 → 110
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    Nucleotide Protein
    Heading Accession and Version

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