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    EMB2016 embryo defective 2016 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819736, updated on 18-Sep-2024

    Summary

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    Official Symbol
    EMB2016
    Official Full Name
    embryo defective 2016
    Primary source
    TAIR:AT3G05680
    Locus tag
    AT3G05680
    See related
    Araport:AT3G05680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    embryo defective 2016; F18C1.5; F18C1_5
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    Genomic context

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    See EMB2016 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    28
    Sequence:
    Chromosome: 3; NC_003074.8 (1660523..1672608, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RING/U-box protein Neighboring gene BTB/POZ domain-containing protein Neighboring gene ncRNA Neighboring gene Cystatin/monellin superfamily protein Neighboring gene nuclear factor Y, subunit A2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. N(6)-methyladenosine RNA modification regulates photosynthesis during photodamage in plants. Zhang M, et al. Nat Commun, 2022 Dec 2. PMID 36460653, Free PMC Article
    2. N(6) -Methyladenosine mRNA methylation is important for salt stress tolerance in Arabidopsis. Hu J, et al. Plant J, 2021 Jun. PMID 33843075
    3. Identification of factors required for m(6) A mRNA methylation in Arabidopsis reveals a role for the conserved E3 ubiquitin ligase HAKAI. Růžička K, et al. New Phytol, 2017 Jul. PMID 28503769, Free PMC Article
    4. Identification of genes required for embryo development in Arabidopsis. Tzafrir I, et al. Plant Physiol, 2004 Jul. PMID 15266054, Free PMC Article
    5. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NM_111442.7

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA methyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within RNA methylation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within embryo development ending in seed dormancy NAS
    Non-traceable Author Statement
    more info
    		  
    acts_upstream_of_or_within mRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in photoprotection IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA N6-methyladenosine methyltransferase complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nuclear speck IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    embryo defective 2016
    NP_001319481.1
    • embryo defective 2016 (EMB2016); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown.
    NP_187219.5
    • embryo defective 2016 (EMB2016); Has 4102 Blast hits to 3495 proteins in 322 species: Archae - 0; Bacteria - 116; Metazoa - 1947; Fungi - 730; Plants - 417; Viruses - 33; Other Eukaryotes - 859 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1660523..1672608 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337599.1 → NP_001319481.1  embryo defective 2016 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J8G6, F4J8G7, Q9M9X3
      UniProtKB/TrEMBL
      A0A178VCQ7, A0A7G2EIN6
      Conserved Domains (3) summary
      smart00818
      Location:1966 → 2062
      Amelogenin; Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth
      PHA03378
      Location:1872 → 2050
      PHA03378; EBNA-3B; Provisional
      pfam15912
      Location:4 → 126
      VIR_N; Virilizer, N-terminal

    2. NM_111442.7 → NP_187219.5  embryo defective 2016 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187219.5

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J8G6, F4J8G7, Q9M9X3
      UniProtKB/TrEMBL
      A0A178VCQ7, A0A7G2EIN6
      Conserved Domains (3) summary
      smart00818
      Location:1966 → 2062
      Amelogenin; Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth
      PHA03378
      Location:1872 → 2050
      PHA03378; EBNA-3B; Provisional
      pfam15912
      Location:4 → 126
      VIR_N; Virilizer, N-terminal
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4J8G7.1

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