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    Protein prenylyltransferase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821371, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Protein prenylyltransferase superfamily protein
    Primary source
    TAIR:AT3G18420
    Locus tag
    AT3G18420
    See related
    Araport:AT3G18420
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    SG1; SLOW GREEN 1
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (6324632..6325866, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene NAC domain containing protein 58 Neighboring gene NADH dehydrogenase ubiquinone 1 beta subcomplex subunit 10-B-like protein (Complex I subunit NDUFS6) Neighboring gene Calcium-binding EF-hand family protein Neighboring gene aluminum-activated malate transporter 9 Neighboring gene PLAC8 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The tetratricopeptide repeat-containing protein slow green1 is required for chloroplast development in Arabidopsis. Hu Z, et al. J Exp Bot, 2014 Mar. PMID 24420572, Free PMC Article
    2. Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana. Ferro M, et al. Mol Cell Proteomics, 2003 May. PMID 12766230
    3. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
    4. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    5. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. SG1 is required for chloroplast development in Arabidopsis. [SG1]
      Title: The tetratricopeptide repeat-containing protein slow green1 is required for chloroplast development in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_112727.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in chloroplast organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in cytosol HDA PubMed 
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    Protein prenylyltransferase superfamily protein
    NP_566609.1
    • Protein prenylyltransferase superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Bacterial transcriptional activator domain (InterPro:IPR005158), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G39470.1); Has 2891 Blast hits to 2326 proteins in 645 species: Archae - 346; Bacteria - 1680; Metazoa - 203; Fungi - 21; Plants - 126; Viruses - 0; Other Eukaryotes - 515 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6324632..6325866 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112727.2 → NP_566609.1  Protein prenylyltransferase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566609.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LS48
      UniProtKB/TrEMBL
      A0A178VJN4, A0A5S9XDJ1, A0A7G2EMX0
      Conserved Domains (2) summary
      TIGR02917
      Location:97 → 292
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:259 → 289
      TPR; TPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LS48.1

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