U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    translocation protein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821641, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    translocation protein-like protein
    Primary source
    TAIR:AT3G20920
    Locus tag
    AT3G20920
    See related
    Araport:AT3G20920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (7328576..7330751, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene nuclear factor Y, subunit A9 Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene cytochrome P450, family 705, subfamily A, polypeptide 28 Neighboring gene cytochrome P450, family 705, subfamily A, polypeptide 30

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The ER luminal C-terminus of AtSec62 is critical for male fertility and plant growth in Arabidopsis thaliana. Mitterreiter MJ, et al. Plant J, 2020 Jan. PMID 31355985
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001035657.2
    NM_112984.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within pollen development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    translocation protein-like protein
    NP_001030734.1
    • translocation protein-related; FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocation protein Sec62 (InterPro:IPR004728); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_566671.1
    • translocation protein-related; FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocation protein Sec62 (InterPro:IPR004728); Has 251 Blast hits to 251 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 63; Plants - 45; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      7328576..7330751 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001035657.2 → NP_001030734.1  translocation protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030734.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VMS2, A0A5S9XE33, F4IWB6, Q8L9Y8
      Conserved Domains (1) summary
      cl02170
      Location:65 → 227
      Sec62; Translocation protein Sec62

    2. NM_112984.2 → NP_566671.1  translocation protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566671.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VMS2, A0A5S9XE33, A0A654F964, Q8L9Y8, Q9LIH2
      Conserved Domains (1) summary
      cl02170
      Location:66 → 228
      Sec62; Translocation protein Sec62
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.