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    sequence-specific DNA binding transcription factor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820281, updated on 18-Sep-2024

    Summary

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    Official Full Name
    sequence-specific DNA binding transcription factor
    Primary source
    TAIR:AT3G11100
    Locus tag
    AT3G11100
    See related
    Araport:AT3G11100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (3476187..3477900, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene receptor like protein 35 Neighboring gene LOB domain-containing protein 21 Neighboring gene RING/U-box superfamily protein Neighboring gene Ribosomal protein L41 family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ENAP1 retrains seed germination via H3K9 acetylation mediated positive feedback regulation of ABI5. Zhao B, et al. PLoS Genet, 2021 Dec. PMID 34910726, Free PMC Article
    2. Interaction of Arabidopsis Trihelix-Domain Transcription Factors VFP3 and VFP5 with Agrobacterium Virulence Protein VirF. García-Cano E, et al. PLoS One, 2015. PMID 26571494, Free PMC Article
    3. Histone Deacetylases SRT1 and SRT2 Interact with ENAP1 to Mediate Ethylene-Induced Transcriptional Repression. Zhang F, et al. Plant Cell, 2018 Jan. PMID 29298835, Free PMC Article
    4. EIN2 mediates direct regulation of histone acetylation in the ethylene response. Zhang F, et al. Proc Natl Acad Sci U S A, 2017 Sep 19. PMID 28874528, Free PMC Article
    5. EIN2-dependent regulation of acetylation of histone H3K14 and non-canonical histone H3K23 in ethylene signalling. Zhang F, et al. Nat Commun, 2016 Oct 3. PMID 27694846, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. ENAP1 retrains seed germination via H3K9 acetylation mediated positive feedback regulation of ABI5.
      Title: ENAP1 retrains seed germination via H3K9 acetylation mediated positive feedback regulation of ABI5.
    2. This work establishes a mechanism by which histone deacetylases SRT1 and SRT2 interact with ENAP1 to mediate transcriptional repression by regulating the levels of histone H3 lysine 9 acetylation in the ethylene signaling.[ENAP1]
      Title: Histone Deacetylases SRT1 and SRT2 Interact with ENAP1 to Mediate Ethylene-Induced Transcriptional Repression.
    3. ENAP1 may potentially mediate ethylene-induced histone acetylation via its interactions with EIN2 C terminus. [ENAP1]
      Title: EIN2-dependent regulation of acetylation of histone H3K14 and non-canonical histone H3K23 in ethylene signalling.
    4. VFP3 likely plays an important role in controlling plant homeostasis.
      Title: Interaction of Arabidopsis Trihelix-Domain Transcription Factors VFP3 and VFP5 with Agrobacterium Virulence Protein VirF.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_111947.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables chromatin binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables histone binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables histone binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in epigenetic regulation of gene expression IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within ethylene-activated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of gene expression IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of gene expression IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus HDA PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    sequence-specific DNA binding transcription factor
    NP_566386.1
    • sequence-specific DNA binding transcription factors; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: MADF domain (InterPro:IPR006578); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT5G05550.1); Has 692 Blast hits to 654 proteins in 102 species: Archae - 2; Bacteria - 29; Metazoa - 76; Fungi - 72; Plants - 388; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3476187..3477900 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111947.4 → NP_566386.1  sequence-specific DNA binding transcription factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566386.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LF33, Q8VZI9, Q9C781, Q9SRL9
      UniProtKB/TrEMBL
      A0A178VEE5, A0A654F752
      Conserved Domains (1) summary
      pfam13837
      Location:19 → 100
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VZI9.1

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