U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Nuclear transport factor 2 (NTF2) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826691, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Nuclear transport factor 2 (NTF2) family protein
    Primary source
    TAIR:AT4G10925
    Locus tag
    AT4G10925
    See related
    Araport:AT4G10925
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (6702713..6704651, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene DDE family endonuclease Neighboring gene Plant self-incompatibility protein S1 family Neighboring gene uncharacterized protein Neighboring gene transcriptional coactivator p15 (PC4) family protein (KELP) Neighboring gene RING/U-box protein Neighboring gene SGNH hydrolase-type esterase superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2. Lalonde S, et al. Front Physiol, 2010. PMID 21423366, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    NM_001203769.2
    NM_001340692.1
    NM_001340693.1
    NM_117161.4
    NM_179026.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Nuclear transport factor 2 (NTF2) family protein
    NP_001190698.1
    • Nuclear transport factor 2 (NTF2) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G23960.1).
    NP_567369.1
    • Nuclear transport factor 2 (NTF2) family protein; CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G23960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_849357.1
    • Nuclear transport factor 2 (NTF2) family protein; CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G23960.1); Has 202 Blast hits to 202 proteins in 57 species: Archae - 0; Bacteria - 78; Metazoa - 1; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      6702713..6704651 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203769.2 → NP_001190698.1  Nuclear transport factor 2 (NTF2) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190698.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O81622, Q93YV9
      UniProtKB/TrEMBL
      A0A178UWF8, A0A5S9XR68, A0A654FN09
      Conserved Domains (2) summary
      pfam12937
      Location:37 → 81
      F-box-like
      pfam13474
      Location:108 → 221
      SnoaL_3; SnoaL-like domain

    2. NM_179026.3 → NP_849357.1  Nuclear transport factor 2 (NTF2) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849357.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O81622, Q93YV9
      UniProtKB/TrEMBL
      A0A178UWF8, A0A5S9XR68, A0A654FN09
      Conserved Domains (2) summary
      pfam12937
      Location:37 → 81
      F-box-like
      pfam13474
      Location:108 → 221
      SnoaL_3; SnoaL-like domain

    3. NM_117161.4 → NP_567369.1  Nuclear transport factor 2 (NTF2) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567369.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O81622, Q93YV9
      UniProtKB/TrEMBL
      A0A178UWF8, A0A5S9XR68, A0A654FN09
      Conserved Domains (2) summary
      pfam12937
      Location:37 → 81
      F-box-like
      pfam13474
      Location:108 → 221
      SnoaL_3; SnoaL-like domain

    4. NM_001340692.1 → NP_001328452.1  Nuclear transport factor 2 (NTF2) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O81622, Q93YV9
      UniProtKB/TrEMBL
      A0A178UWF8, A0A5S9XR68, A0A654FN09
      Conserved Domains (2) summary
      pfam12937
      Location:37 → 81
      F-box-like
      pfam13474
      Location:108 → 221
      SnoaL_3; SnoaL-like domain

    5. NM_001340693.1 → NP_001328453.1  Nuclear transport factor 2 (NTF2) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O81622, Q93YV9
      UniProtKB/TrEMBL
      A0A178UWF8, A0A5S9XR68, A0A654FN09
      Conserved Domains (2) summary
      pfam12937
      Location:37 → 81
      F-box-like
      pfam13474
      Location:108 → 221
      SnoaL_3; SnoaL-like domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93YV9.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools