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    RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826924, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RING/U-box superfamily protein
    Primary source
    TAIR:AT4G13100
    Locus tag
    AT4G13100
    See related
    Araport:AT4G13100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F25G13.190; F25G13_190
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (7635765..7639037, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene xyloglucan endotransglucosylase/hydrolase 2 Neighboring gene low-molecular-weight cysteine-rich 37 Neighboring gene BSD domain-containing protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084914.1
    NM_001203784.1
    NM_001203785.1
    NM_179041.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RING/U-box superfamily protein
    NP_001078383.1
    • RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G25030.2); Has 548 Blast hits to 540 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 226; Fungi - 17; Plants - 201; Viruses - 15; Other Eukaryotes - 89 (source: NCBI BLink).
    NP_001190713.1
    • RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G25030.2).
    NP_001190714.1
    • RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G25030.2).
    NP_193046.2
    • RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G25030.2); Has 579 Blast hits to 570 proteins in 103 species: Archae - 0; Bacteria - 0; Metazoa - 242; Fungi - 23; Plants - 211; Viruses - 15; Other Eukaryotes - 88 (source: NCBI BLink).
    NP_849372.2
    • RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G25030.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      7635765..7639037 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340832.1 → NP_001329821.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B8Y8, A0A5S9XRU7, A0A7G2F0B8

    2. NM_117379.3 → NP_193046.2  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193046.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XRU7, A0A7G2F0B8, F4JS89
      Conserved Domains (1) summary
      pfam13920
      Location:211 → 255
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

    3. NM_001340833.1 → NP_001329824.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XRU7, A0A7G2F0B8, F4JS89
      Conserved Domains (1) summary
      pfam13920
      Location:211 → 255
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

    4. NM_001340835.1 → NP_001329823.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XRU7, A0A7G2F0B8, F4JS89
      Conserved Domains (1) summary
      pfam13920
      Location:211 → 255
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

    5. NM_001340834.1 → NP_001329822.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XRU7, A0A7G2F0B8, F4JS89
      Conserved Domains (1) summary
      pfam13920
      Location:211 → 255
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

    6. NM_179041.2 → NP_849372.2  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849372.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EZM6, F4JS86
      Conserved Domains (1) summary
      pfam13920
      Location:217 → 261
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

    7. NM_001084914.1 → NP_001078383.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078383.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EZM6, A8MR29
      Conserved Domains (1) summary
      pfam13920
      Location:208 → 252
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

    8. NM_001203785.1 → NP_001190714.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190714.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EZM6, A8MR29
      Conserved Domains (1) summary
      pfam13920
      Location:208 → 252
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

    9. NM_001203784.1 → NP_001190713.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190713.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XRU7, A0A7G2F0B8, F4JS90
      Conserved Domains (1) summary
      pfam13920
      Location:208 → 252
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
    Nucleotide Protein
    Heading Accession and Version

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