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    lysine ketoglutarate reductase trans-splicing-like protein, putative (DUF707) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827585, updated on 18-Sep-2024

    Summary

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    Official Full Name
    lysine ketoglutarate reductase trans-splicing-like protein, putative (DUF707)
    Primary source
    TAIR:AT4G18530
    Locus tag
    AT4G18530
    See related
    Araport:AT4G18530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28J12.190; F28J12_190
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    11
    Sequence:
    Chromosome: 4; NC_003075.7 (10217338..10220550)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene CLAVATA3/ESR-related 2 Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene uncharacterized protein Neighboring gene alpha/beta-Hydrolases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of sticky generative cell mutants reveals that suppression of callose deposition in the generative cell is necessary for generative cell internalization and differentiation in Arabidopsis. Oh SA, et al. Plant J, 2021 Apr. PMID 33458909
    2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001341290.1
    NM_117967.7

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glycosyltransferase activity ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within pollen development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    lysine ketoglutarate reductase trans-splicing-like protein, putative (DUF707)
    NP_193588.5
    • Protein of unknown function (DUF707); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT4G12840.2); Has 310 Blast hits to 308 proteins in 22 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 303; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      10217338..10220550
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341289.1 → NP_001328769.1  lysine ketoglutarate reductase trans-splicing-like protein, putative (DUF707) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B5M6

    2. NM_117967.7 → NP_193588.5  lysine ketoglutarate reductase trans-splicing-like protein, putative (DUF707) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193588.5

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UW47, F4JRK4
      Conserved Domains (1) summary
      pfam05212
      Location:69 → 380
      DUF707; Protein of unknown function (DUF707)

    3. NM_001341290.1 → NP_001328770.1  lysine ketoglutarate reductase trans-splicing-like protein, putative (DUF707) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UW47, A0A1P8B5N9, A0A654FQK7
      Conserved Domains (1) summary
      pfam05212
      Location:64 → 375
      DUF707; Protein of unknown function (DUF707)
    Nucleotide Protein
    Heading Accession and Version

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