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    binding / calmodulin binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828270, updated on 18-Sep-2024

    Summary

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    Official Full Name
    binding / calmodulin binding protein
    Primary source
    TAIR:AT4G21820
    Locus tag
    AT4G21820
    See related
    Araport:AT4G21820
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T8O5.30; T8O5_30
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    20
    Sequence:
    Chromosome: 4; NC_003075.7 (11577419..11584073)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene DERLIN-2.1 Neighboring gene ncRNA Neighboring gene methionine sulfoxide reductase B7 Neighboring gene methionine sulfoxide reductase B8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NM_001341517.1
    NM_118302.6

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    binding / calmodulin binding protein
    NP_193913.4
    • binding;calmodulin binding; FUNCTIONS IN: calmodulin binding, binding; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Armadillo (InterPro:IPR000225), Calponin-like actin-binding (InterPro:IPR001715), Armadillo-type fold (InterPro:IPR016024), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: myosin 2 (TAIR:AT5G43900.1); Has 3955 Blast hits to 2210 proteins in 242 species: Archae - 0; Bacteria - 4; Metazoa - 3047; Fungi - 265; Plants - 324; Viruses - 0; Other Eukaryotes - 315 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      11577419..11584073
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341516.1 → NP_001329537.1  binding / calmodulin binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7Z7, A0A5S9XWQ4

    2. NM_118302.6 → NP_193913.4  binding / calmodulin binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193913.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XWQ4, F4JKA2
      Conserved Domains (2) summary
      cd00020
      Location:1106 → 1193
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      pfam00307
      Location:427 → 517
      CH; Calponin homology (CH) domain

    3. NM_001341517.1 → NP_001329536.1  binding / calmodulin binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7Z9, A0A5S9XWQ4, A0A654FRJ2
      Conserved Domains (2) summary
      COG5022
      Location:778 → 1250
      COG5022; Myosin heavy chain [General function prediction only]
      pfam00307
      Location:430 → 518
      CH; Calponin homology (CH) domain
    Nucleotide Protein
    Heading Accession and Version

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