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    Cell cycle regulated microtubule associated protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828385, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Cell cycle regulated microtubule associated protein
    Primary source
    TAIR:AT4G22860
    Locus tag
    AT4G22860
    See related
    Araport:AT4G22860
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7H19.40; F7H19_40
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    18
    Sequence:
    Chromosome: 4; NC_003075.7 (11997281..12001631)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Sodium Bile acid symporter family Neighboring gene SNARE associated Golgi protein family Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene leucoanthocyanidin dioxygenase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TPX2-LIKE PROTEIN3 Is the Primary Activator of α-Aurora Kinases and Is Essential for Embryogenesis. Boruc J, et al. Plant Physiol, 2019 Jul. PMID 31097675, Free PMC Article
    2. Functional Divergence of Microtubule-Associated TPX2 Family Members in Arabidopsis thaliana. Dvořák Tomaštíková E, et al. Int J Mol Sci, 2020 Mar 22. PMID 32235723, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. TPX2-LIKE PROTEIN3 Is the Primary Activator of alpha-Aurora Kinases and Is Essential for Embryogenesis.
      Title: TPX2-LIKE PROTEIN3 Is the Primary Activator of α-Aurora Kinases and Is Essential for Embryogenesis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001084961.1
    NM_001341562.1
    NM_118415.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein kinase activator activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of mitotic spindle organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cortical microtubule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in microtubule IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nuclear microtubule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in spindle IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Cell cycle regulated microtubule associated protein
    NP_001078430.1
    • Cell cycle regulated microtubule associated protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Cell cycle regulated microtubule associated protein (InterPro:IPR022021); BEST Arabidopsis thaliana protein match is: Cell cycle regulated microtubule associated protein (TAIR:AT4G11990.1); Has 104 Blast hits to 96 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 3; Plants - 81; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
    NP_194017.3
    • Cell cycle regulated microtubule associated protein; CONTAINS InterPro DOMAIN/s: Cell cycle regulated microtubule associated protein (InterPro:IPR022021); BEST Arabidopsis thaliana protein match is: Cell cycle regulated microtubule associated protein (TAIR:AT4G11990.1); Has 112 Blast hits to 104 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 3; Plants - 89; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      11997281..12001631
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118415.6 → NP_194017.3  Cell cycle regulated microtubule associated protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194017.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178USS2, A0A5S9XUX8, A0A7G2F6P4, Q4V3C5
      Conserved Domains (1) summary
      pfam12214
      Location:257 → 415
      TPX2_importin; Cell cycle regulated microtubule associated protein

    2. NM_001084961.1 → NP_001078430.1  Cell cycle regulated microtubule associated protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078430.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178USS2, A0A5S9XUX8, A0A7G2F6P4, A8MS21
      Conserved Domains (1) summary
      pfam12214
      Location:244 → 407
      TPX2_importin; Cell cycle regulated microtubule associated protein

    3. NM_001341562.1 → NP_001329325.1  Cell cycle regulated microtubule associated protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7D6
    Nucleotide Protein
    Heading Accession and Version

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