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    Cytidine/deoxycytidylate deaminase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829083, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Cytidine/deoxycytidylate deaminase family protein
    Primary source
    TAIR:AT4G29620
    Locus tag
    AT4G29620
    See related
    Araport:AT4G29620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T16L4.130; T16L4_130
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (14519863..14521087)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Cytidine/deoxycytidylate deaminase family protein Neighboring gene Cytidine/deoxycytidylate deaminase family protein Neighboring gene Cytidine/deoxycytidylate deaminase family protein Neighboring gene Cytidine/deoxycytidylate deaminase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    NM_119107.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cytidine deaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cytidine deamination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Cytidine/deoxycytidylate deaminase family protein
    NP_194691.1
    • Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G29600.1); Has 1708 Blast hits to 1703 proteins in 740 species: Archae - 42; Bacteria - 1328; Metazoa - 70; Fungi - 9; Plants - 128; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      14519863..14521087
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119107.3 → NP_194691.1  Cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194691.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0MFA8, O65571, Q9SWZ4
      UniProtKB/TrEMBL
      A0A178V1I6, A0A5S9XXD9, A0A7G2F735
      Conserved Domains (1) summary
      PLN02182
      Location:1 → 337
      PLN02182; cytidine deaminase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O65571.1

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