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    D111/G-patch domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829562, updated on 18-Sep-2024

    Summary

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    Official Full Name
    D111/G-patch domain-containing protein
    Primary source
    TAIR:AT4G34140
    Locus tag
    AT4G34140
    See related
    Araport:AT4G34140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28A23.100; F28A23_100
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    10
    Sequence:
    Chromosome: 4; NC_003075.7 (16350462..16354434)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene UDP-glucosyltransferase 73B2 Neighboring gene uncharacterized protein Neighboring gene UDP-glucosyl transferase 73B1 Neighboring gene Calcium-dependent lipid-binding (CaLB domain) family protein Neighboring gene CYCLIN D3;1 Neighboring gene Galactose oxidase/kelch repeat superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203980.1
    NM_001342255.1
    NM_001342256.1
    NM_001342259.1
    NM_001342260.1
    NM_001342261.1
    NM_001342262.1
    NM_119577.6

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    D111/G-patch domain-containing protein
    NP_001190909.1
    • D111/G-patch domain-containing protein; FUNCTIONS IN: nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: suppressor of abi3-5 (TAIR:AT3G54230.2).
    NP_001320132.1
    • D111/G-patch domain-containing protein; FUNCTIONS IN: nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: suppressor of abi3-5 (TAIR:AT3G54230.2).
    NP_195140.5
    • D111/G-patch domain-containing protein; FUNCTIONS IN: nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: suppressor of abi3-5 (TAIR:AT3G54230.2); Has 620 Blast hits to 588 proteins in 118 species: Archae - 0; Bacteria - 3; Metazoa - 423; Fungi - 53; Plants - 98; Viruses - 3; Other Eukaryotes - 40 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16350462..16354434
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342257.1 → NP_001329508.1  D111/G-patch domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178USX6, A0A1P8B7X0

    2. NM_001342258.1 → NP_001329510.1  D111/G-patch domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178USX6, A0A1P8B7X2

    3. NM_001342256.1 → NP_001320132.1  D111/G-patch domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2F9U9, F4JKL0

    4. NM_001342259.1 → NP_001329507.1  D111/G-patch domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UT98, A0A1P8B7Y7

    5. NM_001342260.1 → NP_001329506.1  D111/G-patch domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UT98, A0A1P8B7Z1
      Conserved Domains (1) summary
      smart00443
      Location:340 → 385
      G_patch; glycine rich nucleic binding domain

    6. NM_001342261.1 → NP_001329511.1  D111/G-patch domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UT98, A0A1P8B7X5

    7. NM_119577.6 → NP_195140.5  D111/G-patch domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195140.5

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2F837, F4JKK9
      Conserved Domains (2) summary
      smart00443
      Location:479 → 524
      G_patch; glycine rich nucleic binding domain
      cd16074
      Location:10 → 60
      OCRE; OCRE domain

    8. NM_001342262.1 → NP_001329509.1  D111/G-patch domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UT98, A0A1P8B7W7

    9. NM_001342255.1 → NP_001329505.1  D111/G-patch domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7X3

    10. NM_001203980.1 → NP_001190909.1  D111/G-patch domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190909.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2F5T2, F4JKK8
      Conserved Domains (2) summary
      smart00443
      Location:479 → 524
      G_patch; glycine rich nucleic binding domain
      cd16074
      Location:10 → 60
      OCRE; OCRE domain
    Nucleotide Protein
    Heading Accession and Version

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