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    PDE312 Nucleic acid-binding, OB-fold-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824009, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PDE312
    Official Full Name
    Nucleic acid-binding, OB-fold-like protein
    Primary source
    TAIR:AT3G48500
    Locus tag
    AT3G48500
    See related
    Araport:AT3G48500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    PIGMENT DEFECTIVE 312; PLASTID TRANSCRIPTIONALLY ACTIVE 10; PTAC10; TAC10
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    Genomic context

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    See PDE312 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    12
    Sequence:
    Chromosome: 3; NC_003074.8 (17962080..17965723)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene AtIII18x5-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. pTAC10, a Key Subunit of Plastid-Encoded RNA Polymerase, Promotes Chloroplast Development. Chang SH, et al. Plant Physiol, 2017 May. PMID 28336770, Free PMC Article
    2. pTAC10, an S1-domain-containing component of the transcriptionally active chromosome complex, is essential for plastid gene expression in Arabidopsis thaliana and is phosphorylated by chloroplast-targeted casein kinase II. Yu QB, et al. Photosynth Res, 2018 Jul. PMID 29330702
    3. TAC7, an essential component of the plastid transcriptionally active chromosome complex, interacts with FLN1, TAC10, TAC12 and TAC14 to regulate chloroplast gene expression in Arabidopsis thaliana. Yu QB, et al. Physiol Plant, 2013 Jul. PMID 23082802
    4. pTAC2, -6, and -12 are components of the transcriptionally active plastid chromosome that are required for plastid gene expression. Pfalz J, et al. Plant Cell, 2006 Jan. PMID 16326926, Free PMC Article
    5. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. pTAC10 is essential for plastid gene expression in Arabidopsis and that it can be phosphorylated by cpCK2
      Title: pTAC10, an S1-domain-containing component of the transcriptionally active chromosome complex, is essential for plastid gene expression in Arabidopsis thaliana and is phosphorylated by chloroplast-targeted casein kinase II.
    2. Data indicate that the expression level of PLASTID TRANSCRIPTIONALLY ACTIVE 10 (pTAC10) is tightly linked to chloroplast development.
      Title: pTAC10, a Key Subunit of Plastid-Encoded RNA Polymerase, Promotes Chloroplast Development.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084790.1
    NM_114708.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast nucleoid HDA PubMed 
    located_in chloroplast stroma HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of plastid-encoded plastid RNA polymerase complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Nucleic acid-binding, OB-fold-like protein
    NP_001078259.1
    • PIGMENT DEFECTIVE 312 (PDE312); LOCATED IN: plastid chromosome, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); Has 95 Blast hits to 93 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 14; Plants - 42; Viruses - 14; Other Eukaryotes - 20 (source: NCBI BLink).
    NP_190419.3
    • PIGMENT DEFECTIVE 312 (PDE312); FUNCTIONS IN: RNA binding; LOCATED IN: plastid chromosome, chloroplast, nucleoid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029); Has 110 Blast hits to 108 proteins in 48 species: Archae - 0; Bacteria - 11; Metazoa - 5; Fungi - 14; Plants - 46; Viruses - 14; Other Eukaryotes - 20 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      17962080..17965723
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114708.5 → NP_190419.3  Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190419.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JF21, Q0WNC4, Q8L7P3, Q9M3G9, Q9SMP7
      UniProtKB/TrEMBL
      A0A178VIV9, A0A5S9XJ35
      Conserved Domains (1) summary
      smart00316
      Location:271 → 329
      S1; Ribosomal protein S1-like RNA-binding domain

    2. NM_001084790.1 → NP_001078259.1  Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078259.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XJ35
      Conserved Domains (1) summary
      smart00316
      Location:271 → 325
      S1; Ribosomal protein S1-like RNA-binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JF21.1

    Gene LinkOut

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